Is it possible to change values in persistence.xml from within the program that is using it ? If yes, i would appreciate some hints or/and links to read.
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Yes
not part of jpa spec, so no. some implementations may allow some updates ... e.g dayanucleus http://www.datanucleus.org/products/accessplatform_3_0/jpa/persistence_unit.html but what do u want to change?