Tensorflow softmax_cross…() function float type er

Question

I resolved in issue from this post, and the use Olivier recommended using the softmax_cross_entropy_with_logits() function. He is correct, but I'm getting a weird data type error.

The error is

tensorflow.python.framework.errors.InvalidArgumentError: You must feed a value for placeholder tensor 'ground_truth' with dtype float
     [[Node: ground_truth = Placeholder[dtype=DT_FLOAT, shape=[], _device="/job:localhost/replica:0/task:0/cpu:0"]()]]

The softmax loss function requires data type float... which I have (it even says ground_truth = Placeholder[dtype=DT_FLOAT in the error message.

Here is my definition: y = tf.placeholder(tf.float32, [None, n_input, n_input, n_classes], name="ground_truth")

then I reshape and input into the loss function

temp_y = tf.reshape(y, [-1, 2])
cost = (tf.nn.softmax_cross_entropy_with_logits(temp_pred, temp_y))

the error happens when I run a loss and accuracy session

loss, acc = sess.run([cost, accuracy], feed_dict={x: batch_x,
                                              temp_y: batch_y,
                                              keep_prob: 1.0})

but debugging right above that step I have

(Pdb) cost
<tf.Tensor 'loss/SoftmaxCrossEntropyWithLogits:0' shape=(?,) dtype=float32>
(Pdb) accuracy
<tf.Tensor 'acc/Mean:0' shape=() dtype=float32>
(Pdb) x
<tf.Tensor 'Placeholder:0' shape=(?, 200, 200) dtype=float32>
(Pdb) batch_x.dtype
dtype('float64')
(Pdb) temp_y
<tf.Tensor 'loss/Reshape_1:0' shape=(?, 2) dtype=float32>
(Pdb) batch_y.dtype
dtype('float64')
(Pdb) batch_x.shape
(10, 200, 200)
(Pdb) batch_y.shape
(400000, 2)

So you can see they are all of type float, so why is it throwing a data type error?

I've also tried: batch_y = np.float32(batch_y) but no luck

The full code is here:

import tensorflow as tf
import pdb
import numpy as np
from numpy import genfromtxt
from PIL import Image

# Parameters
learning_rate = 0.001
training_iters = 10000
batch_size = 10
display_step = 1

# Network Parameters
n_input = 200 # MNIST data input (img shape: 28*28)
n_output = 40000
n_classes = 2 # MNIST total classes (0-9 digits)
#n_input = 200

dropout = 0.75 # Dropout, probability to keep units

# tf Graph input
x = tf.placeholder(tf.float32, [None, n_input, n_input])
y = tf.placeholder(tf.float32, [None, n_input, n_input, n_classes], name="ground_truth")
keep_prob = tf.placeholder(tf.float32) #dropout (keep probability)


def convert_to_2_channel(x, batch_size):
    #assume input has dimension (batch_size,x,y)
    #output will have dimension (batch_size,x,y,2)
    output = np.empty((batch_size, 200, 200, 2))

    temp_arr1 = np.empty((batch_size, 200, 200))
    temp_arr2 = np.empty((batch_size, 200, 200))

    for i in xrange(batch_size):
        for j in xrange(200):
            for k in xrange(200):
                if x[i][j][k] == 1:
                    temp_arr1[i][j][k] = 1
                    temp_arr2[i][j][k] = 0
                else:
                    temp_arr1[i][j][k] = 0
                    temp_arr2[i][j][k] = 1

    for i in xrange(batch_size):
        for j in xrange(200):
            for k in xrange(200):
                for l in xrange(2):
                    if l == 0:
                        output[i][j][k][l] = temp_arr1[i][j][k]
                    else:
                        output[i][j][k][l] = temp_arr2[i][j][k]

    return output


# Create some wrappers for simplicity
def conv2d(x, W, b, strides=1):
    # Conv2D wrapper, with bias and relu activation
    x = tf.nn.conv2d(x, W, strides=[1, strides, strides, 1], padding='SAME')
    x = tf.nn.bias_add(x, b)
    return tf.nn.relu(x)

def maxpool2d(x, k=2):
    # MaxPool2D wrapper
    return tf.nn.max_pool(x, ksize=[1, k, k, 1], strides=[1, k, k, 1],
                          padding='SAME')


# Create model
def conv_net(x, weights, biases, dropout):
    # Reshape input picture
    x = tf.reshape(x, shape=[-1, 200, 200, 1])

    with tf.name_scope("conv1") as scope:
    # Convolution Layer
        conv1 = conv2d(x, weights['wc1'], biases['bc1'])
        # Max Pooling (down-sampling)
        #conv1 = tf.nn.local_response_normalization(conv1)
        conv1 = maxpool2d(conv1, k=2)

    # Convolution Layer
    with tf.name_scope("conv2") as scope:
        conv2 = conv2d(conv1, weights['wc2'], biases['bc2'])
        # Max Pooling (down-sampling)
        #conv2 = tf.nn.local_response_normalization(conv2)
        conv2 = maxpool2d(conv2, k=2)

    # Convolution Layer
    with tf.name_scope("conv3") as scope:
        conv3 = conv2d(conv2, weights['wc3'], biases['bc3'])
        # # Max Pooling (down-sampling)
        #conv3 = tf.nn.local_response_normalization(conv3)
        conv3 = maxpool2d(conv3, k=2)


    temp_batch_size = tf.shape(x)[0]
    with tf.name_scope("deconv1") as scope:
        output_shape = [temp_batch_size, 50, 50, 64]
        conv4 = tf.nn.conv2d_transpose(conv3, weights['wdc1'], output_shape=output_shape, strides=[1,2,2,1], padding="VALID")
        conv4 = tf.nn.bias_add(conv4, biases['bdc1'])
        conv4 = tf.nn.relu(conv4)
        # conv4 = tf.nn.local_response_normalization(conv4)

    with tf.name_scope("deconv2") as scope:
        # output_shape = tf.pack([temp_batch_size, 100, 100, 32])
        output_shape = [temp_batch_size, 100, 100, 32]
        conv5 = tf.nn.conv2d_transpose(conv4, weights['wdc2'], output_shape=output_shape, strides=[1,2,2,1], padding="VALID")
        conv5 = tf.nn.bias_add(conv5, biases['bdc2'])
        conv5 = tf.nn.relu(conv5)
        # conv5 = tf.nn.local_response_normalization(conv5)

    with tf.name_scope("deconv3") as scope:
        # output_shape = tf.pack([temp_batch_size, 200, 200, 1])
        output_shape = [temp_batch_size, 200, 200, 2]
        conv6 = tf.nn.conv2d_transpose(conv5, weights['wdc3'], output_shape=output_shape, strides=[1,2,2,1], padding="VALID")
        conv6 = tf.nn.bias_add(conv6, biases['bdc3'])
    # conv6 = tf.nn.relu(conv6)
    # pdb.set_trace()
    conv6 = tf.nn.dropout(conv6, dropout)

    return conv6
    # Fully connected layer
    # Reshape conv2 output to fit fully connected layer input
    # fc1 = tf.reshape(conv6, [-1, weights['wd1'].get_shape().as_list()[0]])
    # fc1 = tf.add(tf.matmul(fc1, weights['wd1']), biases['bd1'])
    # fc1 = tf.nn.relu(fc1)
    # # Apply Dropout
    # fc1 = tf.nn.dropout(fc1, dropout)
    #
    # return (tf.add(tf.matmul(fc1, weights['out']), biases['out']))# Store layers weight & bias

weights = {
    # 5x5 conv, 1 input, 32 outputs
    'wc1' : tf.Variable(tf.random_normal([5, 5, 1, 32])),
    # 5x5 conv, 32 inputs, 64 outputs
    'wc2' : tf.Variable(tf.random_normal([5, 5, 32, 64])),
    # 5x5 conv, 32 inputs, 64 outputs
    'wc3' : tf.Variable(tf.random_normal([5, 5, 64, 128])),

    'wdc1' : tf.Variable(tf.random_normal([2, 2, 64, 128])),

    'wdc2' : tf.Variable(tf.random_normal([2, 2, 32, 64])),

    'wdc3' : tf.Variable(tf.random_normal([2, 2, 2, 32])),

    # fully connected, 7*7*64 inputs, 1024 outputs
    'wd1': tf.Variable(tf.random_normal([80000, 1024])),
    # 1024 inputs, 10 outputs (class prediction)
    'out': tf.Variable(tf.random_normal([1024, 80000]))
}

biases = {
    'bc1': tf.Variable(tf.random_normal([32])),
    'bc2': tf.Variable(tf.random_normal([64])),
    'bc3': tf.Variable(tf.random_normal([128])),
    'bdc1': tf.Variable(tf.random_normal([64])),
    'bdc2': tf.Variable(tf.random_normal([32])),
    'bdc3': tf.Variable(tf.random_normal([2])),
    'bd1': tf.Variable(tf.random_normal([1024])),
    'out': tf.Variable(tf.random_normal([80000]))
}

# Construct model
# with tf.name_scope("net") as scope:
pred = conv_net(x, weights, biases, keep_prob)
pred = tf.reshape(pred, [-1,n_input,n_input,n_classes])
# Define loss and optimizer
with tf.name_scope("loss") as scope:
    # cost = tf.reduce_mean(tf.nn.sigmoid_cross_entropy_with_logits(pred, y))
    temp_pred = tf.reshape(pred, [-1, 2])
    temp_y = tf.reshape(y, [-1, 2])
    cost = (tf.nn.softmax_cross_entropy_with_logits(temp_pred, temp_y))

with tf.name_scope("opt") as scope:
    optimizer = tf.train.AdamOptimizer(learning_rate=learning_rate).minimize(cost)
    # optimizer = tf.train.GradientDescentOptimizer(learning_rate=learning_rate).minimize(cost)


# Evaluate model
with tf.name_scope("acc") as scope:
    correct_pred = tf.equal(0,tf.cast(tf.sub(tf.nn.softmax(temp_pred),y), tf.int32))
    accuracy = tf.reduce_mean(tf.cast(correct_pred, tf.float32))

# Initializing the variables
init = tf.initialize_all_variables()
saver = tf.train.Saver()
# Launch the graph
with tf.Session() as sess:
    sess.run(init)
    summary = tf.train.SummaryWriter('/tmp/logdir/', sess.graph)
    step = 1
    from tensorflow.contrib.learn.python.learn.datasets.scroll import scroll_data
    data = scroll_data.read_data('/home/kendall/Desktop/')
    # Keep training until reach max iterations
    while step * batch_size < training_iters:
        batch_x, batch_y = data.train.next_batch(batch_size)
        # Run optimization op (backprop)
        batch_x = batch_x.reshape((batch_size, n_input, n_input))
        batch_y = batch_y.reshape((batch_size, n_input, n_input))
        batch_y = convert_to_2_channel(batch_y, batch_size) #converts the 200x200 ground truth to a 200x200x2 classification
        batch_y = batch_y.reshape(batch_size * n_input * n_input, 2)
        sess.run(optimizer, feed_dict={x: batch_x, temp_y: batch_y,
                                       keep_prob: dropout})
        #measure prediction
        prediction = sess.run(tf.nn.softmax(temp_pred), feed_dict={x: batch_x, keep_prob: 1.0})
        print prediction
        if step % display_step == 0:
            # Calculate batch loss and accuracdef conv_net(x, weights, biases, dropout):
            # save_path = "model.ckpt"
            # saver.save(sess, save_path)
            pdb.set_trace()
            loss, acc = sess.run([cost, accuracy], feed_dict={x: batch_x,
                                                              temp_y: batch_y,
                                                              keep_prob: 1.0})
            print "Accuracy = " + str(acc)
            if acc > 0.73:
                break
        step += 1
    print "Optimization Finished!"

    #make prediction
    im = Image.open('/home/kendall/Desktop/HA900_frames/frame0035.tif')
    batch_x = np.array(im)
    # pdb.set_trace()
    batch_x = batch_x.reshape((1, n_input, n_input))
    batch_x = batch_x.astype(float)
    pdb.set_trace()
    prediction = sess.run(tf.nn.sigmoid(pred), feed_dict={x: batch_x, keep_prob: dropout})
    print prediction
    arr1 = np.empty((n_input,n_input))
    arr2 = np.empty((n_input,n_input))
    for i in xrange(n_input):
        for j in xrange(n_input):
            for k in xrange(2):
                if k == 0:
                    arr1[i][j] = (prediction[0][i][j][k])
                else:
                    arr2[i][j] = (prediction[0][i][j][k])
    # prediction = np.asarray(prediction)
    # prediction = np.reshape(prediction, (200,200))
    # np.savetxt("prediction.csv", prediction, delimiter=",")
    np.savetxt("prediction1.csv", arr1, delimiter=",")
    np.savetxt("prediction2.csv", arr2, delimiter=",")
    # np.savetxt("prediction2.csv", arr2, delimiter=",")

    # Calculate accuracy for 256 mnist test images
    print "Testing Accuracy:", \
        sess.run(accuracy, feed_dict={x: data.test.images[:256],
                                      y: data.test.labels[:256],
                                      keep_prob: 1.})

EDIT I tried Olivier's suggestion below -- I have trained on a single image and made a prediction on the same image, however the results are noise (image below)

0   1   0   0   0   0   1   0   0.1123563871    0.0098750331
0   0   0   0   0   0   0   0   0.3422192633    0.1503699124
0   0   1   1   0   0   1   0   0.2514399588    0.2409999073
0   0   0   1   0   0   0   0   6.89521839376539E-005   3.05128295963186E-008
0   0   1   0   0   0   0   0   0.1123563871    0.0098750331
1   0   0   0   0   0   0   0   0.3422192633    0.1503699124
0   0   1   0   0   1   0   0   0.2514399588    0.2409999073
1   0   0   0   0   0   0   0   6.89521839376539E-005   3.05128295963186E-008
0.1123563871    0.0098750331    0.4323458374    5.16190539201489E-007   0.1123563871    0.0098750331    0.4323458374    5.16190539201489E-007   0.1123563871    0.0098750331
0.3422192633    0.1503699124    0.0003182398    0.0169620775    0.3422192633    0.1503699124    0.0003182398    0.0169620775    0.3422192633    0.1503699124
0.2514399588    0.2409999073    0.1795956045    0.1424995959    0.2514399588    0.2409999073    0.1795956045    0.1424995959    0.2514399588    0.2409999073
6.89521839376539E-005   3.05128295963186E-008   0.2851913273    0.002106138 6.89521839376539E-005   3.05128295963186E-008   0.2851913273    0.002106138 6.89521839376539E-005   3.05128295963186E-008
0.1123563871    0.0098750331    0.4323458374    5.16190539201489E-007   0.1123563871    0.0098750331    0.4323458374    5.16190539201489E-007   0.1123563871    0.0098750331
0.3422192633    0.1503699124    0.0003182398    0.0169620775    0.3422192633    0.1503699124    0.0003182398    0.0169620775    0.3422192633    0.1503699124
0.2514399588    0.2409999073    0.1795956045    0.1424995959    0.2514399588    0.2409999073    0.1795956045    0.1424995959    0.2514399588    0.2409999073
6.89521839376539E-005   3.05128295963186E-008   0.2851913273    0.002106138 6.89521839376539E-005   3.05128295963186E-008   0.2851913273    0.002106138 6.89521839376539E-005   3.05128295963186E-008
0.1123563871    0.0098750331    0.4323458374    5.16190539201489E-007   0.1123563871    0.0098750331    0.4323458374    5.16190539201489E-007   0.1123563871    0.0098750331
0.3422192633    0.1503699124    0.0003182398    0.0169620775    0.3422192633    0.1503699124    0.0003182398    0.0169620775    0.3422192633    0.1503699124

SOLUTION I had to change the prediction to this:

prediction1 = sess.run(pred, feed_dict={x: batch_x, keep_prob: 1.0})
prediction1 = prediction1.reshape((40000,2))
prediction1 = tf.nn.softmax(prediction1)
prediction1 = prediction1.eval()
prediction1 = prediction1.reshape((n_input, n_input, 2))

Answer 1

You have created a placeholder with:

y = tf.placeholder(tf.float32, [None, n_input, n_input, n_classes], name="ground_truth")

The error is quite clear:

You must feed a value for placeholder tensor 'ground_truth'

When calling sess.run([cost, accuracy], feed_dict={x: batch_x, temp_y: batch_y, keep_prob: 1.0}), you are not feeding the parameter y.

You should instead use:

batch_y = convert_to_2_channel(batch_y, batch_size)
# do not reshape batch_y now
sess.run([cost, accuracy], feed_dict={x: batch_x,
                                      y: batch_y,
                                      keep_prob: 1.0})