After you close the ipython notebook, I realized all the code is there but the namespace has been reset, as in all of the variables I had were gone. Is there a way I could save the variables so that when I turn ipython notebook back on, the variables are all there without rerunning the code?
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Use the storemagic command.
http://ipython.org/ipython-doc/rel-0.12/config/extensions/storemagic.html