I'm running an Azure Mobile Server project locally with a local SQL Database. I started from the Quickstart project, but as soon as I change the Entity to something more complex, I get this error with my migration:
"Cannot create more than one clustered index on table..."
Even with the correct schema I get this other error:
"Automatic migrations that affect the location of the migrations history system table (such as default schema changes) are not supported. Please use code-based migrations for operations that affect the location of the migrations history system table."
If you're using migrations, there's a chance that EF is trying to create both the primary key and CreatedAt column as clustered indexes. If you tell the migration to use the Azure Mobile Services/Apps SqlGenerator, it should do the right thing.
See if my answer here fixes the issue for you.
This is an artifact of Entity Framework, the ORM that .NET Mobile Services use. It's recommended that you use Code First Migrations to address this issue. Mobile Services has a full guide which is kept up to date on how to enable code first migrations. https://azure.microsoft.com/en-us/documentation/articles/mobile-services-dotnet-backend-how-to-use-code-first-migrations/
If you'd rather not deal with Code First Migrations, you can drop your database each time (not really a good idea for production purposes) or use the JavaScript backend.