How to determine the longest increasing subsequenc

Question

I have a set of integers. I want to find the longest increasing subsequence of that set using dynamic programming.

Answer 1

O(n^2) java implementation:

void LIS(int arr[]){
        int maxCount[]=new int[arr.length];
        int link[]=new int[arr.length];
        int maxI=0;
        link[0]=0;
        maxCount[0]=0;

        for (int i = 1; i < arr.length; i++) {
            for (int j = 0; j < i; j++) {
                if(arr[j]<arr[i] && ((maxCount[j]+1)>maxCount[i])){
                    maxCount[i]=maxCount[j]+1;
                    link[i]=j;
                    if(maxCount[i]>maxCount[maxI]){
                        maxI=i;
                    }
                }
            }
        }


        for (int i = 0; i < link.length; i++) {
            System.out.println(arr[i]+"   "+link[i]);
        }
        print(arr,maxI,link);

    }

    void print(int arr[],int index,int link[]){
        if(link[index]==index){
            System.out.println(arr[index]+" ");
            return;
        }else{
            print(arr, link[index], link);
            System.out.println(arr[index]+" ");
        }
    }

Answer 2

This can be solved in O(n^2) using Dynamic Programming. Python code for the same would be like:-

def LIS(numlist):
    LS = [1]
    for i in range(1, len(numlist)):
        LS.append(1)
        for j in range(0, i):
            if numlist[i] > numlist[j] and LS[i]<=LS[j]:
                LS[i] = 1 + LS[j]
    print LS
    return max(LS)

numlist = map(int, raw_input().split(' '))
print LIS(numlist)

For input:5 19 5 81 50 28 29 1 83 23

output would be:[1, 2, 1, 3, 3, 3, 4, 1, 5, 3] 5

The list_index of output list is the list_index of input list. The value at a given list_index in output list denotes the Longest increasing subsequence length for that list_index.

Answer 3

Here is a Scala implementation of the O(n^2) algorithm:

object Solve {
  def longestIncrSubseq[T](xs: List[T])(implicit ord: Ordering[T]) = {
    xs.foldLeft(List[(Int, List[T])]()) {
      (sofar, x) =>
        if (sofar.isEmpty) List((1, List(x)))
        else {
          val resIfEndsAtCurr = (sofar, xs).zipped map {
            (tp, y) =>
              val len = tp._1
              val seq = tp._2
              if (ord.lteq(y, x)) {
                (len + 1, x :: seq) // reversely recorded to avoid O(n)
              } else {
                (1, List(x))
              }
          }
          sofar :+ resIfEndsAtCurr.maxBy(_._1)
        }
    }.maxBy(_._1)._2.reverse
  }

  def main(args: Array[String]) = {
    println(longestIncrSubseq(List(
      0, 8, 4, 12, 2, 10, 6, 14, 1, 9, 5, 13, 3, 11, 7, 15)))
  }
}

Answer 4

This is a Java implementation in O(n^2). I just did not use Binary Search to find the smallest element in S, which is >= than X. I just used a for loop. Using Binary Search would make the complexity at O(n logn)

public static void olis(int[] seq){

    int[] memo = new int[seq.length];

    memo[0] = seq[0];
    int pos = 0;

    for (int i=1; i<seq.length; i++){

        int x = seq[i];

            if (memo[pos] < x){ 
                pos++;
                memo[pos] = x;
            } else {

                for(int j=0; j<=pos; j++){
                    if (memo[j] >= x){
                        memo[j] = x;
                        break;
                    }
                }
            }
            //just to print every step
            System.out.println(Arrays.toString(memo));
    }

    //the final array with the LIS
    System.out.println(Arrays.toString(memo));
    System.out.println("The length of lis is " + (pos + 1));

}

Answer 5

here is java O(nlogn) implementation

import java.util.Scanner;

public class LongestIncreasingSeq {


    private static int binarySearch(int table[],int a,int len){

        int end = len-1;
        int beg = 0;
        int mid = 0;
        int result = -1;
        while(beg <= end){
            mid = (end + beg) / 2;
            if(table[mid] < a){
                beg=mid+1;
                result = mid;
            }else if(table[mid] == a){
                return len-1;
            }else{
                end = mid-1;
            }
        }
        return result;
    }

    public static void main(String[] args) {        

//        int[] t = {1, 2, 5,9,16};
//        System.out.println(binarySearch(t , 9, 5));
        Scanner in = new Scanner(System.in);
        int size = in.nextInt();//4;

        int A[] = new int[size];
        int table[] = new int[A.length]; 
        int k = 0;
        while(k<size){
            A[k++] = in.nextInt();
            if(k<size-1)
                in.nextLine();
        }        
        table[0] = A[0];
        int len = 1; 
        for (int i = 1; i < A.length; i++) {
            if(table[0] > A[i]){
                table[0] = A[i];
            }else if(table[len-1]<A[i]){
                table[len++]=A[i];
            }else{
                table[binarySearch(table, A[i],len)+1] = A[i];
            }            
        }
        System.out.println(len);
    }    
}

Answer 6

Petar Minchev's explanation helped clear things up for me, but it was hard for me to parse what everything was, so I made a Python implementation with overly-descriptive variable names and lots of comments. I did a naive recursive solution, the O(n^2) solution, and the O(n log n) solution.

I hope it helps clear up the algorithms!

The Recursive Solution

def recursive_solution(remaining_sequence, bigger_than=None):
    """Finds the longest increasing subsequence of remaining_sequence that is      
    bigger than bigger_than and returns it.  This solution is O(2^n)."""

    # Base case: nothing is remaining.                                             
    if len(remaining_sequence) == 0:
        return remaining_sequence

    # Recursive case 1: exclude the current element and process the remaining.     
    best_sequence = recursive_solution(remaining_sequence[1:], bigger_than)

    # Recursive case 2: include the current element if it's big enough.            
    first = remaining_sequence[0]

    if (first > bigger_than) or (bigger_than is None):

        sequence_with = [first] + recursive_solution(remaining_sequence[1:], first)

        # Choose whichever of case 1 and case 2 were longer.                         
        if len(sequence_with) >= len(best_sequence):
            best_sequence = sequence_with

    return best_sequence                                                        

The O(n^2) Dynamic Programming Solution

def dynamic_programming_solution(sequence):
    """Finds the longest increasing subsequence in sequence using dynamic          
    programming.  This solution is O(n^2)."""

    longest_subsequence_ending_with = []
    backreference_for_subsequence_ending_with = []
    current_best_end = 0

    for curr_elem in range(len(sequence)):
        # It's always possible to have a subsequence of length 1.                    
        longest_subsequence_ending_with.append(1)

        # If a subsequence is length 1, it doesn't have a backreference.             
        backreference_for_subsequence_ending_with.append(None)

        for prev_elem in range(curr_elem):
            subsequence_length_through_prev = (longest_subsequence_ending_with[prev_elem] + 1)

            # If the prev_elem is smaller than the current elem (so it's increasing)   
            # And if the longest subsequence from prev_elem would yield a better       
            # subsequence for curr_elem.                                               
            if ((sequence[prev_elem] < sequence[curr_elem]) and
                    (subsequence_length_through_prev >
                         longest_subsequence_ending_with[curr_elem])):

                # Set the candidate best subsequence at curr_elem to go through prev.    
                longest_subsequence_ending_with[curr_elem] = (subsequence_length_through_prev)
                backreference_for_subsequence_ending_with[curr_elem] = prev_elem
                # If the new end is the best, update the best.    

        if (longest_subsequence_ending_with[curr_elem] >
                longest_subsequence_ending_with[current_best_end]):
            current_best_end = curr_elem
            # Output the overall best by following the backreferences.  

    best_subsequence = []
    current_backreference = current_best_end

    while current_backreference is not None:
        best_subsequence.append(sequence[current_backreference])
        current_backreference = (backreference_for_subsequence_ending_with[current_backreference])

    best_subsequence.reverse()

    return best_subsequence                                                   

The O(n log n) Dynamic Programming Solution

def find_smallest_elem_as_big_as(sequence, subsequence, elem):
    """Returns the index of the smallest element in subsequence as big as          
    sequence[elem].  sequence[elem] must not be larger than every element in       
    subsequence.  The elements in subsequence are indices in sequence.  Uses       
    binary search."""

    low = 0
    high = len(subsequence) - 1

    while high > low:
        mid = (high + low) / 2
        # If the current element is not as big as elem, throw out the low half of    
        # sequence.                                                                  
        if sequence[subsequence[mid]] < sequence[elem]:
            low = mid + 1
            # If the current element is as big as elem, throw out everything bigger, but 
        # keep the current element.                                                  
        else:
            high = mid

    return high


def optimized_dynamic_programming_solution(sequence):
    """Finds the longest increasing subsequence in sequence using dynamic          
    programming and binary search (per                                             
    http://en.wikipedia.org/wiki/Longest_increasing_subsequence).  This solution   
    is O(n log n)."""

    # Both of these lists hold the indices of elements in sequence and not the        
    # elements themselves.                                                         
    # This list will always be sorted.                                             
    smallest_end_to_subsequence_of_length = []

    # This array goes along with sequence (not                                     
    # smallest_end_to_subsequence_of_length).  Following the corresponding element 
    # in this array repeatedly will generate the desired subsequence.              
    parent = [None for _ in sequence]

    for elem in range(len(sequence)):
        # We're iterating through sequence in order, so if elem is bigger than the   
        # end of longest current subsequence, we have a new longest increasing          
        # subsequence.                                                               
        if (len(smallest_end_to_subsequence_of_length) == 0 or
                    sequence[elem] > sequence[smallest_end_to_subsequence_of_length[-1]]):
            # If we are adding the first element, it has no parent.  Otherwise, we        
            # need to update the parent to be the previous biggest element.            
            if len(smallest_end_to_subsequence_of_length) > 0:
                parent[elem] = smallest_end_to_subsequence_of_length[-1]
            smallest_end_to_subsequence_of_length.append(elem)
        else:
            # If we can't make a longer subsequence, we might be able to make a        
            # subsequence of equal size to one of our earlier subsequences with a         
            # smaller ending number (which makes it easier to find a later number that 
            # is increasing).                                                          
            # Thus, we look for the smallest element in                                
            # smallest_end_to_subsequence_of_length that is at least as big as elem       
            # and replace it with elem.                                                
            # This preserves correctness because if there is a subsequence of length n 
            # that ends with a number smaller than elem, we could add elem on to the   
            # end of that subsequence to get a subsequence of length n+1.              
            location_to_replace = find_smallest_elem_as_big_as(sequence, smallest_end_to_subsequence_of_length, elem)
            smallest_end_to_subsequence_of_length[location_to_replace] = elem
            # If we're replacing the first element, we don't need to update its parent 
            # because a subsequence of length 1 has no parent.  Otherwise, its parent  
            # is the subsequence one shorter, which we just added onto.                
            if location_to_replace != 0:
                parent[elem] = (smallest_end_to_subsequence_of_length[location_to_replace - 1])

    # Generate the longest increasing subsequence by backtracking through parent.  
    curr_parent = smallest_end_to_subsequence_of_length[-1]
    longest_increasing_subsequence = []

    while curr_parent is not None:
        longest_increasing_subsequence.append(sequence[curr_parent])
        curr_parent = parent[curr_parent]

    longest_increasing_subsequence.reverse()

    return longest_increasing_subsequence