I have a relatively simple python multiprocessing script that sets up a pool of workers that append output to a pandas dataframe
by way of a custom manager. What I am finding is when I call close()/join() on the pool, not all the tasks submitted by apply_async are being completed.
Here's a simplified example that submits 1000 jobs but only half complete causing an assertion error. Have I overlooked something very simple or is this perhaps a bug?
from pandas import DataFrame
from multiprocessing.managers import BaseManager, Pool
class DataFrameResults:
def __init__(self):
self.results = DataFrame(columns=("A", "B"))
def get_count(self):
return self.results["A"].count()
def register_result(self, a, b):
self.results = self.results.append([{"A": a, "B": b}], ignore_index=True)
class MyManager(BaseManager): pass
MyManager.register('DataFrameResults', DataFrameResults)
def f1(results, a, b):
results.register_result(a, b)
def main():
manager = MyManager()
manager.start()
results = manager.DataFrameResults()
pool = Pool(processes=4)
for (i) in range(0, 1000):
pool.apply_async(f1, [results, i, i*i])
pool.close()
pool.join()
print results.get_count()
assert results.get_count() == 1000
if __name__ == "__main__":
main()
[EDIT] The issue which you're seeing is because of this code:
this isn't atomic. So in some cases, the thread will be interrupted after reading
self.results
(or while appending) but before it can assign the new frame toself.results
-> this instance will be lost.The correct solution is to wait use the results objects to get the results and then append all of them in the main thread.