I think I did this before but can't find the code.
Flash as many other graphical frameworks use the top-left corner as the coordinate origin (0,0) because it's how the underlying memory model is by convention.
But it would be really simpler for my calculations if the origin was in the center of the stage, because all the game revolves around the center and uses a lot of trigonometry, angles, etc.
Is there some built-in method like Stage::setOrigin( uint, uint );
or something like that?
Create a MovieClip or Sprite and add that to the stage as your root object (instead of adding to the Stage) at stage.width/2, stage.height/2. Then when you add your game objects to that instead. Add your game objects at 0,0 inside of that clip and they will be centered on the stage.
Create a class that overrides the x and y setters and getters to handle the calculations. Any MovieClips on stage should extends this new class.
Bonus: you can change the origin values whenever you want, so it doesn't have to be at the center of the stage.