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How have you tweaked the MATLAB environment to better suit your needs? One tweak per answer.
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I run "format compact" to remove all those frustrating blank lines spacing out my output. Oh so simple, but makes it so much nicer to me.
I invert colors to have a black backgroud, easier on the eyes.
(Alt+Shift+PrintScreen on Windows, you can configure away the huge icons)
I use a startup.m file (sits in the local MATLAB path) to make sure that I have the settings I want whenever I start up MATLAB. This includes such things as formatting the REPL and plot parameters.
I set the number of lines in the command window scroll buffer to the maximum (25,000). This doesn't seem to noticeably affect performance and allows me to display a large amount of data/results.
I set the Command Window output numeric format to long g.
I changed the default font in the MATLAB editor to 10 point ProFont (which can be obtained here) so I could write code for long periods of time without giving myself a headache from straining my eyes.