A first-order transition matrix of 6 states can be constructed very elegantly as follows
x = [1 6 1 6 4 4 4 3 1 2 2 3 4 5 4 5 2 6 2 6 2 6]; % the Markov chain
tm = full(sparse(x(1:end-1),x(2:end),1)) % the transition matrix.
So here is my problem, how do you construct a second-order transition matrix elegantly? The solution I came up with is as follows
[si sj] = ndgrid(1:6);
s2 = [si(:) sj(:)]; % combinations for 2 contiguous states
tm2 = zeros([numel(si),6]); % initialize transition matrix
for i = 3:numel(x) % construct transition matrix
tm2(strmatch(num2str(x(i-2:i-1)),num2str(s2)),x(i))=...
tm2(strmatch(num2str(x(i-2:i-1)),num2str(s2)),x(i))+1;
end
Is there a one/two-liner, no-loop alternative?
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Edit: I tried comparing my solution against Amro's with "x=round(5*rand([1,1000])+1);"
% ted teng's solution
Elapsed time is 2.225573 seconds.
% Amro's solution
Elapsed time is 0.042369 seconds.
What a difference! FYI, grp2idx is available online.
Try the following: