Python(pandas): removing duplicates based on two c

Question

I have a dataframe which contains duplicates values according to two columns (A and B):

A B C
1 2 1
1 2 4
2 7 1
3 4 0
3 4 8

I want to remove duplicates keeping the row with max value in column C. This would lead to:

A B C
1 2 4
2 7 1
3 4 8

I cannot figure out how to do that. Should I use drop_duplicates(), something else?

Answer 1

You can do it with drop_duplicates as you wanted

# initialisation
d = pd.DataFrame({'A' : [1,1,2,3,3], 'B' : [2,2,7,4,4],  'C' : [1,4,1,0,8]})

d = d.sort_values("C", ascending=False)
d = d.drop_duplicates(["A","B"])

If it's important to get the same order

d = d.sort_index()

Answer 2

I think groupby should work.

df.groupby(['A', 'B']).max()['C']

If you need a dataframe back you can chain the reset index call.

df.groupby(['A', 'B']).max()['C'].reset_index()

Answer 3

You can do this simply by using pandas drop duplicates function

df.drop_duplicates(['A','B'],keep= 'last')

Answer 4

You can do it using group by:

c_maxes = df.groupby(['A', 'B']).C.transform(max)
df = df.loc[df.C == c_maxes]

c_maxes is a Series of the maximum values of C in each group but which is of the same length and with the same index as df. If you haven't used .transform then printing c_maxes might be a good idea to see how it works.

Another approach using drop_duplicates would be

df.sort('C').drop_duplicates(subset=['A', 'B'], take_last=True)

Not sure which is more efficient but I guess the first approach as it doesn't involve sorting.

EDIT: From pandas 0.18 up the second solution would be df.sort_values('C').drop_duplicates(subset=['A', 'B'], keep='last') or, alternatively, df.sort_values('C', ascending=False).drop_duplicates(subset=['A', 'B']). In any case, the groupby solution seems to be significantly more performing:

%timeit -n 10 df.loc[df.groupby(['A', 'B']).C.max == df.C]
10 loops, best of 3: 25.7 ms per loop

%timeit -n 10 df.sort_values('C').drop_duplicates(subset=['A', 'B'], keep='last')
10 loops, best of 3: 101 ms per loop