Need to insert 100000 rows in mysql using hibernat

Question

I am trying to insert 100,000 rows in a MYSQL table under 5 seconds using Hibernate(JPA). I have tried every trick hibernate offers and still can not do better than 35 seconds.

1st optimisation : I started with IDENTITY sequence generator which was resulting in 60 seconds to insert. I later abandoned the sequence generator and started assigning the @Id field myself by reading the MAX(id) and using AtomicInteger.incrementAndGet() to assign fields myself. That reduced the insert time to 35 seconds.

2nd optimisation : I enabled batch inserts, by adding

<prop key="hibernate.jdbc.batch_size">30</prop> <prop key="hibernate.order_inserts">true</prop> <prop key="hibernate.current_session_context_class">thread</prop> <prop key="hibernate.jdbc.batch_versioned_data">true</prop>

to the configuration. I was shocked to find that batch inserts did absolutely nothing to decrease insert time. It was still 35 seconds!

Now, I am thinking about trying to insert using multiple threads. Anyone has any pointers? Should I have chosen MongoDB?

Below is my configuration: 1. Hibernate configuration `

<bean id="entityManagerFactoryBean" class="org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean">
        <property name="dataSource" ref="dataSource" />
        <property name="packagesToScan" value="com.progresssoft.manishkr" />
        <property name="jpaVendorAdapter">
            <bean class="org.springframework.orm.jpa.vendor.HibernateJpaVendorAdapter" />
        </property>
        <property name="jpaProperties">
            <props>
                <prop key="hibernate.hbm2ddl.auto">${hibernate.hbm2ddl.auto}</prop>
                <prop key="hibernate.dialect">${hibernate.dialect}</prop>
                <prop key="hibernate.show_sql">${hibernate.show_sql}</prop>
                <prop key="hibernate.format_sql">${hibernate.format_sql}</prop>
                <prop key="hibernate.jdbc.batch_size">30</prop>
                <prop key="hibernate.order_inserts">true</prop>
                <prop key="hibernate.current_session_context_class">thread</prop>
                <prop key="hibernate.jdbc.batch_versioned_data">true</prop>
            </props>
        </property>
    </bean>

    <bean class="org.springframework.jdbc.datasource.DriverManagerDataSource"
          id="dataSource">
        <property name="driverClassName" value="${database.driver}"></property>
        <property name="url" value="${database.url}"></property>
        <property name="username" value="${database.username}"></property>
        <property name="password" value="${database.password}"></property>
    </bean>

    <bean id="transactionManager" class="org.springframework.orm.jpa.JpaTransactionManager">
        <property name="entityManagerFactory" ref="entityManagerFactoryBean" />
    </bean>



    <tx:annotation-driven transaction-manager="transactionManager" />

`

2. Entity configuration :

`

@Entity
@Table(name = "myEntity")
public class MyEntity {

    @Id
    private Integer id;

    @Column(name = "deal_id")
    private String dealId;

    ....
    ....

    @Temporal(TemporalType.TIMESTAMP)
    @Column(name = "timestamp")
    private Date timestamp;

    @Column(name = "amount")
    private BigDecimal amount;

    @OneToOne(cascade = CascadeType.ALL)
    @JoinColumn(name = "source_file")
    private MyFile sourceFile;

    public Deal(Integer id,String dealId, ....., Timestamp timestamp, BigDecimal amount, SourceFile sourceFile) {
        this.id = id;
        this.dealId = dealId;
        ...
        ...
        ...
        this.amount = amount;
        this.sourceFile = sourceFile;
    }


    public String getDealId() {
        return dealId;
    }

    public void setDealId(String dealId) {
        this.dealId = dealId;
    }

   ...

   ...


    ....

    public BigDecimal getAmount() {
        return amount;
    }

    public void setAmount(BigDecimal amount) {
        this.amount = amount;
    }

    ....


    public Integer getId() {
        return id;
    }

    public void setId(Integer id) {
        this.id = id;
    }

`

3. Persisting code (service) :

`

@Service
@Transactional
public class ServiceImpl implements MyService{

    @Autowired
    private MyDao dao;
....

`void foo(){
        for(MyObject d : listOfObjects_100000){
            dao.persist(d);
        }
}

` 4. Dao class :

`

@Repository
public class DaoImpl implements MyDao{

    @PersistenceContext
    private EntityManager em;

    public void persist(Deal deal){
        em.persist(deal);
    }
}

`

Logs: `

DEBUG o.h.e.j.b.internal.AbstractBatchImpl - Reusing batch statement
18:26:32.906 [http-nio-8080-exec-2] DEBUG org.hibernate.SQL - insert into deal (amount, deal_id, timestamp, from_currency, source_file, to_currency, id) values (?, ?, ?, ?, ?, ?, ?)
18:26:32.906 [http-nio-8080-exec-2] DEBUG o.h.e.j.b.internal.AbstractBatchImpl - Reusing batch statement
18:26:32.906 [http-nio-8080-exec-2] DEBUG org.hibernate.SQL - insert into deal (amount, deal_id, timestamp, from_currency, source_file, to_currency, id) values (?, ?, ?, ?, ?, ?, ?)
18:26:32.906 [http-nio-8080-exec-2] DEBUG o.h.e.j.b.internal.AbstractBatchImpl - Reusing batch statement
18:26:32.906 [http-nio-8080-exec-2] DEBUG org.hibernate.SQL - insert into deal (amount, deal_id, timestamp, from_currency, source_file, to_currency, id) values (?, ?, ?, ?, ?, ?, ?)
18:26:32.906 [http-nio-8080-exec-2] DEBUG o.h.e.j.b.internal.AbstractBatchImpl - Reusing batch statement
18:26:32.906 [http-nio-8080-exec-2] DEBUG org.hibernate.SQL - insert into deal (amount, deal_id, timestamp, from_currency, source_file, to_currency, id) values (?, ?, ?, ?, ?, ?, ?)
18:26:32.906 [http-nio-8080-exec-2] DEBUG o.h.e.j.b.internal.AbstractBatchImpl - Reusing batch statement
18:26:32.906 [http-nio-8080-exec-2] DEBUG org.hibernate.SQL - insert into deal (amount, deal_id, timestamp, from_currency, source_file, to_currency, id) values (?, ?, ?, ?, ?, ?, ?)
18:26:32.906 [http-nio-8080-exec-2] 

... ...

DEBUG o.h.e.j.b.internal.AbstractBatchImpl - Reusing batch statement
18:26:34.002 [http-nio-8080-exec-2] DEBUG org.hibernate.SQL - insert into deal (amount, deal_id, timestamp, from_currency, source_file, to_currency, id) values (?, ?, ?, ?, ?, ?, ?)
18:26:34.002 [http-nio-8080-exec-2] DEBUG o.h.e.j.b.internal.AbstractBatchImpl - Reusing batch statement
18:26:34.002 [http-nio-8080-exec-2] DEBUG org.hibernate.SQL - insert into deal (amount, deal_id, timestamp, from_currency, source_file, to_currency, id) values (?, ?, ?, ?, ?, ?, ?)
18:26:34.002 [http-nio-8080-exec-2] DEBUG o.h.e.j.b.internal.AbstractBatchImpl - Reusing batch statement
18:26:34.002 [http-nio-8080-exec-2] DEBUG org.hibernate.SQL - insert into deal (amount, deal_id, timestamp, from_currency, source_file, to_currency, id) values (?, ?, ?, ?, ?, ?, ?)
18:26:34.002 [http-nio-8080-exec-2] DEBUG o.h.e.j.b.internal.AbstractBatchImpl - Reusing batch statement
18:26:34.002 [http-nio-8080-exec-2] DEBUG org.hibernate.SQL - insert into deal (amount, deal_id, timestamp, from_currency, source_file, to_currency, id) values (?, ?, ?, ?, ?, ?, ?)
18:26:34.002 [http-nio-8080-exec-2] DEBUG o.h.e.j.batch.internal.BatchingBatch - Executing batch size: 27
18:26:34.011 [http-nio-8080-exec-2] DEBUG org.hibernate.SQL - update deal_source_file set invalid_rows=?, source_file=?, valid_rows=? where id=?
18:26:34.015 [http-nio-8080-exec-2] DEBUG o.h.e.j.batch.internal.BatchingBatch - Executing batch size: 1
18:26:34.018 [http-nio-8080-exec-2] DEBUG o.h.e.t.i.jdbc.JdbcTransaction - committed JDBC Connection
18:26:34.018 [http-nio-8080-exec-2] DEBUG o.h.e.t.i.jdbc.JdbcTransaction - re-enabling autocommit
18:26:34.032 [http-nio-8080-exec-2] DEBUG o.s.orm.jpa.JpaTransactionManager - Closing JPA EntityManager [org.hibernate.jpa.internal.EntityManagerImpl@2354fb09] after transaction
18:26:34.032 [http-nio-8080-exec-2] DEBUG o.s.o.jpa.EntityManagerFactoryUtils - Closing JPA EntityManager
18:26:34.032 [http-nio-8080-exec-2] DEBUG o.h.e.j.internal.JdbcCoordinatorImpl - HHH000420: Closing un-released batch
18:26:34.032 [http-nio-8080-exec-2] DEBUG o.h.e.j.i.LogicalConnectionImpl - Releasing JDBC connection
18:26:34.033 [http-nio-8080-exec-2] DEBUG o.h.e.j.i.LogicalConnectionImpl - Released JDBC connection

'

Answer 1

After trying all possible solutions I finally found a solution to insert 100,000 rows under 5 seconds!

Things I tried:

1) Replaced hibernate/database's AUTOINCREMENT/GENERATED id's by self generated ID's using AtomicInteger

2) Enabling batch_inserts with batch_size=50

3) Flushing cache after every 'batch_size' number of persist() calls

4) multithreading (did not attempt this one)

Finally what worked was using a native multi-insert query and inserting 1000 rows in one sql insert query instead of using persist() on every entity. For inserting 100,000 entities, I create a native query like this "INSERT into MyTable VALUES (x,x,x),(x,x,x).......(x,x,x)" [1000 row inserts in one sql insert query]

Now it takes around 3 seconds for inserting 100,000 records! So the bottleneck was the orm itself! For bulk inserts, the only thing that seems to work is native insert queries!

Answer 2

Another option to consider is StatelessSession:

A command-oriented API for performing bulk operations against a database.

A stateless session does not implement a first-level cache nor interact with any second-level cache, nor does it implement transactional write-behind or automatic dirty checking, nor do operations cascade to associated instances. Collections are ignored by a stateless session. Operations performed via a stateless session bypass Hibernate's event model and interceptors. Stateless sessions are vulnerable to data aliasing effects, due to the lack of a first-level cache.

For certain kinds of transactions, a stateless session may perform slightly faster than a stateful session.

Related discussion: Using StatelessSession for Batch processing

Answer 3

1. You are using Spring for managing the transaction but break it by using thread as the current session context. When using Spring to manage your transactions don't mess around with the hibernate.current_session_context_class property. Remove it.

2. Don't use the DriverManagerDataSource use a proper connection pool like HikariCP.

3. In your for loop you should flush and clear the EntityManager at regular intervals, preferably the same as your batch size. If you don't a single persist takes longer and longer, because when you do that Hibernate checks the first level cache for dirty objects, the more objects the more time it takes. With 10 or 100 it is acceptable but checking 10000s of objects for each persist will take its toll.

-

@Service
@Transactional
public class ServiceImpl implements MyService{

    @Autowired
    private MyDao dao;

    @PersistenceContext
    private EntityManager em;


    void foo(){
        int count = 0;
        for(MyObject d : listOfObjects_100000){
            dao.persist(d);
            count++;
            if ( (count % 30) == 0) {
               em.flush();
               em.clear();
            }    
        }
    }

For a more in depth explanation see this blog and this blog.

Answer 4

Uff. You can do a lot of things to increase speed.

1.) Use @DynamicInsert and @DynamicUpdate to prevent the DB from inserting non-empty columns and updating changed columns.

2.) Try to insert the columns directly (without using hibernate) into your database to see if hibernate is really your bottleneck.

3.) Use a sessionfactory and only commit your transaction every e.g. 100 inserts. Or only open and close the transaction once and flush your data every 100 inserts.

4.) Use the ID generation strategy "sequence" and let hibernate preallocate (via the parameter allocationsize) the IDs.

5.) Use caches.

Some of this possible solutions can have timing disadvantages when not used correctly. But you have a lot of opportunities.