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I have made a small change in some code but TortoiseGit shows it as modified (red exclamation sign) although I have committed, pulled, pushed, but it stays. What should I do here? I have not seen this issue before.
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Apart from what @Andy mentioned, you can make the overlays work faster by limiting the folders that it has to monitor.
Right click-> TortoiseGit -> Settings -> Icon Overlays
Here enter include and exclude paths. I usually explicitly point to the my repos / working copies:
When the icons are not updating you can quickly kill the icon overlay cache using the following "Run" command:
The cache process should restart itself automatically. You can even turn this into a desktop shortcut if you notice it happening frequently.