Matplotlib animation either freezes after a few fr

Question

I've been trying for hours to get this simple script working, but nothing I do seems to help. It's a slight modification of the most basic animated plot sample code from the Matplotlib website, that should just show a few frames of noise (I have the same issue with the unmodified code from their website BTW).

On my computer with the TkAgg backend I get about 20 frames (out of 60) before the plot window freezes. With Qt4Agg I just get a frozen, black window and no frames at all are plotted. I've tried multiple combinations of different NumPy, PyQt, Python and Matplotlib versions, but always get the same result.

Please let me know if this works for you or if anything looks wrong. I'm pretty sure this did work in the past, so I'm thinking it may be a Windows issue or something related to ion().

FYI I'm using Windows 7 (32 bit) and I've tested with Python 2.6/2.7, MPL 1.0.0/0.9.9.8, PyQt 4.6/4.7, Numpy 1.4/1.5b.

import matplotlib
matplotlib.use('TkAgg') # Qt4Agg gives an empty, black window
from pylab import *
import time

ion()
hold(False)

# create initial plot
z = zeros(10)
line, = plot(z)
ylim(-3, 3)

for i in range(60):
    print 'frame:', i

    d = randn(10)
    line.set_ydata(d)

    draw()
    time.sleep(10e-3)

This simpler version also freezes after the first couple frames:

from pylab import *

ion()
hold(False)

for i in range(40):
    plot(randn(10))
    draw()

show()

Thanks!

EDIT: These people seem to be having the same or a similar problem as me:

• mail-archive.com/[e-mail]/msg10844.html
• stackoverflow.com/questions/2604119/matplotlib-pyplot-pylab-not-updating-figure-while-isinteractive-using-ipython
• mail-archive.com/[e-mail]/msg01283.html

Doesn't look like any of them were able to fix it either :(

Answer 1

calling time.sleep() or plt.pause() causes flicker on the graph window when using blitting, but I got good results by simply calling the event loop explicitely :

fig.canvas.blit() # or draw()
fig.canvas.start_event_loop(0.001) #1 ms seems enough

Answer 2

When you say freezes after the first couple of frames do you mean 2 or 3, or say, 40 or 60, as those are the upper limits of your loop?

If you want the animation to continue indefinitely you need something like

while True:
    d = randn(10)
    line.set_ydata(d)
    draw()
    time.sleep(10e-3)

But you'll have to force quit your program.

Answer 3

After many hours fighting with this same issue I think I've found the answer: To do these simple animations with matplotlib you can only use the GTKAgg backend. This is stated as a passing remark in the scipy cookbook, but I think it should be stressed more clearly. When I use it, I can run your animations until the end without freezes or any other problem.

Beware that to use this backend you need to install PyGTK. I don't know what else you need on Windows (because I'm on Linux) but that seems the minimum. Besides, if you want to use it by default you have to add this line to your matplotlibrc (on Linux placed on ~/.matplotlib/matplotlibrc):

backend      : GTKAgg

To use the other backends you need to follow the official matplotlib examples, but that means you have to build a mini-gui application just to run a simple animation, and I find that quite awful!

Answer 4

Generally you can't use show() and draw() like this. As the Posts are suggesting, you need a small GUI loop, just look at the Animations examples on the Matplotlib page.

Answer 5

Typically, GUI frameworks need to 'own' the main loop of the program. Sitting in a tight loop with sleeps to delay iterations will usually 'break' GUI applications (your problem description is consistent with typical breakage along these lines). It's possible that the matplotlib devs have implemented some behind the scenes logic to pevent these lockups from happening for certain toolkits but restructuring your program slightly should eliminate any chance of mainloop ownership being the problem (which is very likely I think). The matplotlib animation wiki also suggests using native event loops for anything nontrivial (probably for this reason)

Rather than sitting in a loop with sleeps, I suggest that, instead, you use the GUI toolkit to schedule a function call after a certain delay.

def update_function():
    # do frame calculation here

refresh_timer = QtCore.QTimer()
QtCore.QObject.connect( refresh_timer, QtCore.SIGNAL('timeout()'), update_function )
refresh_timer.start( 1.0 / 30 ) # have update_function called at 30Hz

Looking at the matplotlib documentation suggests that it may be possible to use their API natively but I couldn't find any good examples using just a quick search.

Answer 6

I was struggling with this same problem for quite a while. I would recommend taking a look at this example: http://matplotlib.sourceforge.net/examples/animation/strip_chart_demo.html

I thought I was following this example exactly, but it wasn't working. It would only run the "update" function one time. Turns out the only difference in my code was that the animation.FuncAnimation() was not assigned to a variable. As soon as I assigned the return value of animation.FuncAnimation() to a value, everything worked.