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I am using Visual Studio 2012 along with TypeScript 0.9.5 and Web Essential 3.5. After I make changes in TypeScript file and save it. The changes are not saved in JavaScript file. I navigated through Tools > Options > Web Essentials > TypeScript in VS 2012 but found the options have changed. Earlier I was using TS 0.8.1 and WebEssentials 2.8 and everything was working.
Please provide your suggestions.
Just a link through to Tim LaBonne's blog where he outlines the changes needed to the project file to support Compile on Save.
http://www.timlabonne.com/2013/07/getting-compile-on-save-to-work-for-typescript-in-vs2012/
You should also update to the latest Web Essentials ( version 3.6.5 as at time of question posted ).