Up until recently, I had this file structure:
-Repo A
|- .git
|- files
|- Repo B
|- .git
|- files
I then casually checked out a different branch on Repo A (simply switched branches in Github for Mac), immediately switched back, and voilà:
-Repo A
|- .git
|- files
|- Repo B
Repo B is there but empty! Not even a .git directory!
No remotes, and there goes 2 weeks of 3D modelling.
(The irony of it all is that my very first 3D-model (before all of this) went corrupt so I figured I'd use git and commit on a regular basis. And so I did...)