FXML layout not loaded when run jar outside Eclips

I try to load my fxml layout file as follows:

 FXMLLoader loader = new FXMLLoader();
 loader.setLocation(getClass().getResource("view/MainLayout.fxml"));
 AnchorPane personOverview = (AnchorPane) loader.load();

When I run application in Eclipse all works, but when I deployed application with Ant, I've got an error:

After building project my folder structure is:

and the same in deployed jar

I understand that there might be a problem with difference in resolving path inside jar and in eclipse, but I can't resolve this. I use Java 1.8 and JavaFX 8.

UPDATE 1 Accodring to the error I think it resolves path using absolute URL (starts with file:/C:/...), but should use relative url inside jar file. Why it use absolute path is main question.

UPDATE 2

Interesting that root layout loads successfully, with same code..

FXMLLoader loader = new FXMLLoader();
loader.setLocation(MainApp.class.getResource("view/RootLayout.fxml"));
rootLayout = (BorderPane) loader.load();

But inner layout initialization fails.

Stack trace:

java -jar MeterChecker.jar
javafx.fxml.LoadException: unknown path

at javafx.fxml.FXMLLoader.constructLoadException(Unknown Source)
at javafx.fxml.FXMLLoader.loadImpl(Unknown Source)
at javafx.fxml.FXMLLoader.load(Unknown Source)
at com.wolf6969.checker.MainApp.showMain(Unknown Source)
at com.wolf6969.checker.MainApp.start(Unknown Source)
at com.sun.javafx.application.LauncherImpl.lambda$launchApplication1$153(Unknown Source)
at com.sun.javafx.application.LauncherImpl$$Lambda$51/138227185.run(Unknown Source)
at com.sun.javafx.application.PlatformImpl.lambda$runAndWait$166(Unknown Source)
at com.sun.javafx.application.PlatformImpl$$Lambda$45/584634336.run(Unknown Source)
at com.sun.javafx.application.PlatformImpl.lambda$null$164(Unknown Source)
at com.sun.javafx.application.PlatformImpl$$Lambda$47/94326726.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at com.sun.javafx.application.PlatformImpl.lambda$runLater$165(Unknown Source)
at com.sun.javafx.application.PlatformImpl$$Lambda$46/501263526.run(Unknown Source)
at com.sun.glass.ui.InvokeLaterDispatcher$Future.run(Unknown Source)
at com.sun.glass.ui.win.WinApplication._runLoop(Native Method)
at com.sun.glass.ui.win.WinApplication.lambda$null$141(Unknown Source)
at com.sun.glass.ui.win.WinApplication$$Lambda$37/96639997.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at sun.reflect.misc.Trampoline.invoke(Unknown Source)
at sun.reflect.GeneratedMethodAccessor1.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at sun.reflect.misc.MethodUtil.invoke(Unknown Source)
... 18 more
Caused by: java.lang.NullPointerException
at com.wolf6969.checker.service.SmsService.getCommandKeys(Unknown Source)
at com.wolf6969.checker.view.MainController.setupControls(Unknown Source)
at com.wolf6969.checker.view.MainController.initialize(Unknown Source)
... 27 more
Exception in Application stop method
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at com.sun.javafx.application.LauncherImpl.launchApplicationWithArgs(Unknown Source)
at com.sun.javafx.application.LauncherImpl.launchApplication(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at sun.launcher.LauncherHelper$FXHelper.main(Unknown Source)
Caused by: java.lang.RuntimeException: Exception in Application stop method
at com.sun.javafx.application.LauncherImpl.launchApplication1(Unknown Source)
at com.sun.javafx.application.LauncherImpl.lambda$launchApplication$147(Unknown Source)
at com.sun.javafx.application.LauncherImpl$$Lambda$48/752848266.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: java.lang.NullPointerException
at com.wolf6969.checker.MainApp.stop(Unknown Source)
at com.sun.javafx.application.LauncherImpl.lambda$launchApplication1$154(Unknown Source)
at com.sun.javafx.application.LauncherImpl$$Lambda$147/1418913435.run(Unknown Source)
at com.sun.javafx.application.PlatformImpl.lambda$runAndWait$166(Unknown Source)
at com.sun.javafx.application.PlatformImpl$$Lambda$45/584634336.run(Unknown Source)
at com.sun.javafx.application.PlatformImpl.lambda$null$164(Unknown Source)
at com.sun.javafx.application.PlatformImpl$$Lambda$47/94326726.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at com.sun.javafx.application.PlatformImpl.lambda$runLater$165(Unknown Source)
at com.sun.javafx.application.PlatformImpl$$Lambda$46/501263526.run(Unknown Source)
at com.sun.glass.ui.InvokeLaterDispatcher$Future.run(Unknown Source)
at com.sun.glass.ui.win.WinApplication._runLoop(Native Method)
at com.sun.glass.ui.win.WinApplication.lambda$null$141(Unknown Source)
at com.sun.glass.ui.win.WinApplication$$Lambda$37/96639997.run(Unknown Source)
... 1 more
Exception running application com.wolf6969.checker.MainApp

I am using following code

 FXMLLoader loader=new FXMLLoader(Main.class.getResource("views/MainFrame.fxml"));
 AnchorPane rootpane=(AnchorPane) loader.load();

and it is working as it should

edit : after looking at your trace I think problem is in your controller , try having a look at this link

Caused by: java.lang.NullPointerException
at com.wolf6969.checker.service.SmsService.getCommandKeys(Unknown Source)
at com.wolf6969.checker.view.MainController.setupControls(Unknown Source)
at com.wolf6969.checker.view.MainController.initialize(Unknown Source)