I have a 2D grid 50*50. For each location I have an intensity value(i.e data is like (x,y,intensity)
for each of those 50*50 locations). I would like to visualize the data as a heatmap.
The twist is that every second the intensity will change(for most of the locations), which means I will need to re-draw the heatmap every second. I am wondering what is the best library/approach to handle this kind of real-time varing heatmap.
This really depends on how you get your data, but:
import matplotlib.pyplot as plt
import numpy as np
import time
# create the figure
fig = plt.figure()
ax = fig.add_subplot(111)
im = ax.imshow(np.random.random((50,50)))
plt.show(block=False)
# draw some data in loop
for i in range(10):
# wait for a second
time.sleep(1)
# replace the image contents
im.set_array(np.random.random((50,50)))
# redraw the figure
fig.canvas.draw()
This should draw 11 random 50x50 images with 1 second intervals. The essential part is im.set_array
which replaces the image data and fig.canvas.draw
which redraws the image onto the canvas.
If your data is really a list of points in the form (x, y, intensity)
, you can transform them into a numpy.array
:
import numpy as np
# create an empty array (NaNs will be drawn transparent)
data = np.empty((50,50))
data[:,:] = np.nan
# ptlist is a list of (x, y, intensity) triplets
ptlist = np.array(ptlist)
data[ptlist[:,1].astype('int'), ptlist[:,0].astype('int')] = ptlist[:,2]