Getting this null error in spark Dataset.filter
Input CSV:
name,age,stat
abc,22,m
xyz,,s
Working code:
case class Person(name: String, age: Long, stat: String)
val peopleDS = spark.read.option("inferSchema","true")
.option("header", "true").option("delimiter", ",")
.csv("./people.csv").as[Person]
peopleDS.show()
peopleDS.createOrReplaceTempView("people")
spark.sql("select * from people where age > 30").show()
Failing code (Adding following lines return error):
val filteredDS = peopleDS.filter(_.age > 30)
filteredDS.show()
Returns null error
java.lang.RuntimeException: Null value appeared in non-nullable field:
- field (class: "scala.Long", name: "age")
- root class: "com.gcp.model.Person"
If the schema is inferred from a Scala tuple/case class, or a Java bean, please try to use scala.Option[_] or other nullable types (e.g. java.lang.Integer instead of int/scala.Int).
Exception you get should explain everything but let's go step-by-step:
When load data using csv
data source all fields are marked as nullable
:
val path: String = ???
val peopleDF = spark.read
.option("inferSchema","true")
.option("header", "true")
.option("delimiter", ",")
.csv(path)
peopleDF.printSchema
root
|-- name: string (nullable = true)
|-- age: integer (nullable = true)
|-- stat: string (nullable = true)
Missing field is represented as SQL NULL
peopleDF.where($"age".isNull).show
+----+----+----+
|name| age|stat|
+----+----+----+
| xyz|null| s|
+----+----+----+
Next you convert Dataset[Row]
to Dataset[Person]
which uses Long
to encode age
field. Long
in Scala cannot be null
. Because input schema is nullable
, output schema stays nullable
despite of that:
val peopleDS = peopleDF.as[Person]
peopleDS.printSchema
root
|-- name: string (nullable = true)
|-- age: integer (nullable = true)
|-- stat: string (nullable = true)
Note that it as[T]
doesn't affect the schema at all.
When you query Dataset
using SQL (on registered table) or DataFrame
API Spark won't deserialize the object. Since schema is still nullable
we can execute:
peopleDS.where($"age" > 30).show
+----+---+----+
|name|age|stat|
+----+---+----+
+----+---+----+
without any issues. This is just a plain SQL logic and NULL
is a valid value.
When we use statically typed Dataset
API:
peopleDS.filter(_.age > 30)
Spark has to deserialize the object. Because Long
cannot be null
(SQL NULL
) it fails with exception you've seen.
If it wasn't for that you'd get NPE.
Correct statically typed representation of your data should use Optional
types:
case class Person(name: String, age: Option[Long], stat: String)
with adjusted filter function:
peopleDS.filter(_.age.map(_ > 30).getOrElse(false))
+----+---+----+
|name|age|stat|
+----+---+----+
+----+---+----+
If you prefer you can use pattern matching:
peopleDS.filter {
case Some(age) => age > 30
case _ => false // or case None => false
}
Note that you don't have to (but it would be recommended anyway) to use optional types for name
and stat
. Because Scala String
is just a Java String
it be can null
. Of course if you go with this approach you have to explicitly check if accessed values are null
or not.
Related Spark 2.0 Dataset vs DataFrame