I have a 2-way repeated measures design (3 x 2), and I'd like to get figure out how to calculate effect sizes (partial eta squared).
I have a matrix with data in it (called a) like so (repeated measures)
A.a A.b B.a B.b C.a C.b
1 514.0479 483.4246 541.1342 516.4149 595.5404 588.8000
2 569.0741 550.0809 569.7574 599.1509 621.4725 656.8136
3 738.2037 660.3058 812.2970 735.8543 767.0683 738.7920
4 627.1101 638.1338 641.2478 682.7028 694.3569 761.6241
5 599.3417 637.2846 599.4951 632.5684 626.4102 677.2634
6 655.1394 600.9598 729.3096 669.4189 728.8995 716.4605
idata =
Caps Lower
A a
A b
B a
B b
C a
C b
I know how to do a repeated measures ANOVA with the car package (type 3 SS is standard in my field although I know that it results in a logical error.. if somebody wants to explain that to me like I'm 5 I would love to understand it):
summary(Anova(lm(a ~ 1),
idata=idata,type=3,
idesign=~Caps*Lower)),
multivariate=FALSE)
I think what I want to do is take this part of the summary print out:
Univariate Type III Repeated-Measures ANOVA Assuming Sphericity
SS num Df Error SS den Df F Pr(>F)
(Intercept) 14920141 1 153687 5 485.4072 3.577e-06 ***
Caps 33782 2 8770 10 19.2589 0.000372 ***
Lower 195 1 13887 5 0.0703 0.801451
Caps:Lower 2481 2 907 10 13.6740 0.001376 **
And use it to calculate partial ETA squared. So, if I'm not mistaken, I need to take the SS from the first column and divide it by (itself + SS Error for that row) for each effect. Is this the correct way to go about it? If so, how do I do it? I can't figure out how to reference values from the summary print out.
Thanks