Problems with an ImageJ plugin

问题:

I use the ImageJ as my default image viewer program. In order to view .nii format images, I installed the Nifti_io plugin following the instructions in here!

However, when I try to open an image from terminal, it just says

File is not in a supported format, a reader plugin si not available, or it was not found. /tmp/TempFile-2805.nii

If I try to open the image just by clicking in ImageJ Plugins>Nifti Reader>/[imageURL] it opens it correctly, but I would like to open it directly from terminal. Thank you very much.

回答1:

It looks like the Nifti_io plugin adds commands for importing but doesn't use the I/O plugin mechanism of ImageJ: HandleExtraFileTypes.

I would recommend downloading Fiji and giving it a try. It bundles a lot of useful ImageJ plugins, and the default File > Open will fall back to Bio-Formats, which provides a NiftiReader implementation.