I am on Win7 OS with R 3.3.1 in Rstudio. Intention is to use glmnet with parallel processing. From the ?glmnet help:
parallel: If TRUE, use parallel foreach to fit each fold. Must
register parallel before hand, such as doMC or others. See the
example below.
From the referenced example:
# Parallel
require(doMC)
registerDoMC(cores=4)
install.packages('doMC') returns package is not available. Manually checking CRAN gives downloadable UNIX code but Windows binaries are not available.
Can I still use doMC like code under my Win7 OS or what is a useful alternative?
As written in the vignette to doMC
The doMC package acts as an interface between foreach and the
multicore functionality of the parallel package, originally written by
Simon Urbanek and incorporated into parallel for R2.14.0. The
multicore functionality currently only works with operating systems
that support the fork system call (which means that Windows isn't
supported)
You can try to use the snow package and a SOCK cluster instead. (Thx @HongOoi for the hint that loading doSNOW is not really required.)
library(doParallel)
#the following line will create a local 4-node snow cluster
workers=makeCluster(4,type="SOCK")
registerDoParallel(workers)
foreach(i=1:4) %dopar% Sys.getpid()
