parallelizing matrix multiplication through thread

问题:

I am trying to speed up matrix multiplication on multicore architecture. For this end, I try to use threads and SIMD at the same time. But my results are not good. I test speed up over sequential matrix multiplication:

void sequentialMatMul(void* params)
{
    cout << "SequentialMatMul started.";
    int i, j, k;
    for (i = 0; i < N; i++)
    {
        for (k = 0; k < N; k++)
        {
            for (j = 0; j < N; j++)
            {
                X[i][j] += A[i][k] * B[k][j];
            }
        }
    }
    cout << "\nSequentialMatMul finished.";
}

I tried to add threading and SIMD to matrix multiplication as follows:

void threadedSIMDMatMul(void* params)
{
    bounds *args = (bounds*)params;
    int lowerBound = args->lowerBound;
    int upperBound = args->upperBound;
    int idx = args->idx;

    int i, j, k;
    for (i = lowerBound; i <upperBound; i++)
    {
        for (k = 0; k < N; k++)
        {
            for (j = 0; j < N; j+=4)
            {
                mmx1 = _mm_loadu_ps(&X[i][j]);
                mmx2 = _mm_load_ps1(&A[i][k]);
                mmx3 = _mm_loadu_ps(&B[k][j]);
                mmx4 = _mm_mul_ps(mmx2, mmx3);
                mmx0 = _mm_add_ps(mmx1, mmx4);
                _mm_storeu_ps(&X[i][j], mmx0);
            }
        }
    }
    _endthread();
}

And the following section is used for calculating lowerbound and upperbound of each thread:

bounds arg[CORES];
for (int part = 0; part < CORES; part++)
{
    arg[part].idx = part;
    arg[part].lowerBound = (N / CORES)*part;
    arg[part].upperBound = (N / CORES)*(part + 1);
}

And finally threaded SIMD version is called like this:

HANDLE  handle[CORES];      
for (int part = 0; part < CORES; part++)
{
    handle[part] = (HANDLE)_beginthread(threadedSIMDMatMul, 0, (void*)&arg[part]);
}
for (int part = 0; part < CORES; part++)
{
WaitForSingleObject(handle[part], INFINITE);
}

The result is as follows: Test 1:

// arrays are defined as follow
float A[N][N];
float B[N][N];
float X[N][N];
N=2048
Core=1//just one thread

Sequential time: 11129ms

Threaded SIMD matmul time: 14650ms

Speed up=0.75x

Test 2:

//defined arrays as follow
float **A = (float**)_aligned_malloc(N* sizeof(float), 16);
float **B = (float**)_aligned_malloc(N* sizeof(float), 16);
float **X = (float**)_aligned_malloc(N* sizeof(float), 16);
for (int k = 0; k < N; k++)
{
    A[k] = (float*)malloc(cols * sizeof(float));
    B[k] = (float*)malloc(cols * sizeof(float));
    X[k] = (float*)malloc(cols * sizeof(float));
}
N=2048
Core=1//just one thread

Sequential time: 15907ms

Threaded SIMD matmul time: 18578ms

Speed up=0.85x

Test 3:

//defined arrays as follow
float A[N][N];
float B[N][N];
float X[N][N];
N=2048
Core=2

Sequential time: 10855ms

Threaded SIMD matmul time: 27967ms

Speed up=0.38x

Test 4:

//defined arrays as follow
float **A = (float**)_aligned_malloc(N* sizeof(float), 16);
float **B = (float**)_aligned_malloc(N* sizeof(float), 16);
float **X = (float**)_aligned_malloc(N* sizeof(float), 16);
for (int k = 0; k < N; k++)
{
    A[k] = (float*)malloc(cols * sizeof(float));
    B[k] = (float*)malloc(cols * sizeof(float));
    X[k] = (float*)malloc(cols * sizeof(float));
}
N=2048
Core=2

Sequential time: 16579ms

Threaded SIMD matmul time: 30160ms

Speed up=0.51x

My question: why I don’t get speed up?

回答1:

Here are the times I get building on your algorithm on my four core i7 IVB processor.

sequential:         3.42 s
4 threads:          0.97 s
4 threads + SSE:    0.86 s

Here are the times on a 2 core P9600 @2.53 GHz which is similar to the OP's E2200 @2.2 GHz

sequential: time    6.52 s
2 threads: time     3.66 s
2 threads + SSE:    3.75 s

I used OpenMP because it makes this easy. Each thread in OpenMP runs over effectively

lowerBound = N*part/CORES;
upperBound = N*(part + 1)/CORES;

(note that that is slightly different than your definition. Your definition can give the wrong result due to rounding for some values of N since you divide by CORES first.)

As to the SIMD version. It's not much faster probably due it being memory bandwidth bound . It's probably not really faster because GCC already vectroizes the loop.

The most optimal solution is much more complicated. You need to use loop tiling and reorder the elements within tiles to get the optimal performance. I don't have time to do that today.

Here is the code I used:

//c99 -O3 -fopenmp -Wall foo.c
#include <stdio.h>
#include <string.h>
#include <x86intrin.h>
#include <omp.h>

void gemm(float * restrict a, float * restrict b, float * restrict c, int n) {
    for(int i=0; i<n; i++) {
        for(int k=0; k<n; k++) {
            for(int j=0; j<n; j++) {
                c[i*n+j] += a[i*n+k]*b[k*n+j];
            }
        }
    }
}

void gemm_tlp(float * restrict a, float * restrict b, float * restrict c, int n) {
    #pragma omp parallel for
    for(int i=0; i<n; i++) {
        for(int k=0; k<n; k++) {
            for(int j=0; j<n; j++) {
                c[i*n+j] += a[i*n+k]*b[k*n+j];
            }
        }
    }
}   

void gemm_tlp_simd(float * restrict a, float * restrict b, float * restrict c, int n) {
    #pragma omp parallel for
    for(int i=0; i<n; i++) {
        for(int k=0; k<n; k++) {
            __m128 a4 = _mm_set1_ps(a[i*n+k]);
            for(int j=0; j<n; j+=4) {
                __m128 c4 = _mm_load_ps(&c[i*n+j]);
                __m128 b4 = _mm_load_ps(&b[k*n+j]);
                c4 = _mm_add_ps(_mm_mul_ps(a4,b4),c4);
                _mm_store_ps(&c[i*n+j], c4);
            }
        }
    }
}

int main(void) {
    int n = 2048;
    float *a = _mm_malloc(n*n * sizeof *a, 64);
    float *b = _mm_malloc(n*n * sizeof *b, 64);
    float *c1 = _mm_malloc(n*n * sizeof *c1, 64);
    float *c2 = _mm_malloc(n*n * sizeof *c2, 64);
    float *c3 = _mm_malloc(n*n * sizeof *c2, 64);
    for(int i=0; i<n*n; i++) a[i] = 1.0*i;
    for(int i=0; i<n*n; i++) b[i] = 1.0*i;
    memset(c1, 0, n*n * sizeof *c1);
    memset(c2, 0, n*n * sizeof *c2);
    memset(c3, 0, n*n * sizeof *c3);
    double dtime;

    dtime = -omp_get_wtime();
    gemm(a,b,c1,n);
    dtime += omp_get_wtime();
    printf("time %f\n", dtime);

    dtime = -omp_get_wtime();
    gemm_tlp(a,b,c2,n);
    dtime += omp_get_wtime();
    printf("time %f\n", dtime);

    dtime = -omp_get_wtime();
    gemm_tlp_simd(a,b,c3,n);
    dtime += omp_get_wtime();
    printf("time %f\n", dtime);
    printf("error %d\n", memcmp(c1,c2, n*n*sizeof *c1));
    printf("error %d\n", memcmp(c1,c3, n*n*sizeof *c1));
}

回答2:

It looks to me that the threads are sharing __m128 mmx* variables, you probably defined them global/static. You must be getting wrong results in your X array too. Define __m128 mmx* variables inside threadedSIMDMatMul function scope and it will run much faster.

void threadedSIMDMatMul(void* params)
{
    __m128 mmx0, mmx1, mmx2, mmx3, mmx4;
    // rest of the code here
}