I am using PyML for SVM classification. However, I noticed that when I evaluate a multi-class classifier using LOO, the results object does not report the sensitivity and PPV values. Instead they are 0.0:
from PyML import *
from PyML.classifiers import multi
mc = multi.OneAgainstRest(SVM())
data = VectorDataSet('iris.data', labelsColumn=-1)
result = mc.loo(data)
result.getSuccessRate()
>>> 0.95333333333333337
result.getPPV()
>>> 0.0
result.getSensitivity()
>>> 0.0
I have looked at the code but couldn't figure out what is going wrong here. Has somebody a workaround for this?
You cannot get the usual Precision/Recall measurements on a multi-class problem. You have to get Precision/Recall for each class, and you can compute a weighted average.
I don't know about the specifics of PyML, but you can just go through the predictions and calculate them for each class.
For multiclass sensitivity calculation, you can use scikit-learn metrics API.
Notice average=None for sensitivity of each class independently.
sklearn.metrics.recall_score(Y_true,Y_prediction,average=None)
For instance, if Y has 4 classes, the result will be an array with the sensitivity of each one.
array([0.96629213, 0.86263736, 0.81920904, 0.7704918])
