Is there a way to guess the size of data.frame bas

问题:

I am expecting to generate a lot of data and then catch it R. How can I estimate the size of the data.frame (and thus memory needed) by the number of rows, number of columns and variable types?

Example.

If I have 10000 rows and 150 columns out of which 120 are numeric, 20 are strings and 10 are factor level, what is the size of the data frame I can expect? Will the results change depending on the data stored in the columns (as in max(nchar(column)))?

> m <- matrix(1,nrow=1e5,ncol=150)
> m <- as.data.frame(m)
> object.size(m)
120009920 bytes
> a=object.size(m)/(nrow(m)*ncol(m))
> a
8.00066133333333 bytes
> m[,1:150] <- sapply(m[,1:150],as.character)
> b=object.size(m)/(nrow(m)*ncol(m))
> b
4.00098133333333 bytes
> m[,1:150] <- sapply(m[,1:150],as.factor)
> c=object.size(m)/(nrow(m)*ncol(m))
> c
4.00098133333333 bytes
> m <- matrix("ajayajay",nrow=1e5,ncol=150)
> 
> m <- as.data.frame(m)
> object.size(m)
60047120 bytes
> d=object.size(m)/(nrow(m)*ncol(m))
> d
4.00314133333333 bytes

回答1:

You can simulate an object and compute an estimation of the memory that is being used to store it as an R object using object.size:

m <- matrix(1,nrow=1e5,ncol=150)
m <- as.data.frame(m)
m[,1:20] <- sapply(m[,1:20],as.character)
m[,29:30] <- sapply(m[,29:30],as.factor)
object.size(m)
120017224 bytes
print(object.size(m),units="Gb")
0.1 Gb

回答2:

You could create dummy variables that store examples of the data you will be storing in the dataframe.

Then use object.size() to find their size and multiply with the rows and columns accordingly.

回答3:

Check out pryr package as well. It has object_size which may be slightly better for you. From the advanced R

This function is better than the built-in object.size() because it accounts for shared elements within an object and includes the size of environments.

You also need to account for the size of attributes as well as the column types etc.

object.size(attributes(m))