I am trying to create a docker container with some conda environments. When I run the container in interactive mode running
conda update --all
conda env create -f env.yml
runs with no issues. However whenever I try to execute these commands with a Docker file I recieve
/bin/sh: 1: conda: command not foud
Docker file is shown below:
FROM ubuntu:latest
RUN apt-get update && \
apt-get install unzip && \
mkdir /install && \
apt-get install nano
COPY Anaconda3-2018.12-Linux-x86_64.sh env.yml /install/
WORKDIR /install
RUN bash Anaconda3-2018.12-Linux-x86_64.sh -b && \
echo "export PATH="/root/anaconda3/bin:$PATH"" >> ~/.bashrc && \
/bin/bash -c "source ~/.bashrc"
RUN conda update --all
RUN conda env create -f env.yml
So it appears that sh is being used instead of bash so I edited the Dockerfile to the following:
FROM ubuntu:latest
RUN apt-get update && \
apt-get install unzip && \
mkdir /install && \
apt-get install nano
COPY Anaconda3-2018.12-Linux-x86_64.sh env.yml /install/
WORKDIR /install
RUN bash Anaconda3-2018.12-Linux-x86_64.sh -b && \
echo "export PATH="/root/anaconda3/bin:$PATH"" >> ~/.bashrc && \
/bin/bash -c "source ~/.bashrc"
RUN /bin/bash -c "conda update --all"
with the following error
/bin/bash: conda: command not found