Create an R package that depends on another R pack

问题:

I am creating an R package on GitHub, LW1949, that depends on another R package on GitHub, jvamisc. When I try to install LW1949 using

require(devtools)
devtools::install_github("user/LW1949")

I get the message: Skipping 1 packages not available: jvamisc.

How can I point the import(jvamisc) part of the LW1949 package (in NAMESPACE) to Github instead of CRAN to find this dependency?

Surely this question has been asked and answered before, but I was not successful searching for it (perhaps because the search terms are so common - R, package, GitHub, etc.). I did stumble across Travis CI and Packrat, neither of which I've used. No idea if they would help. I would prefer as simple a fix as possible. (Wouldn't we all?)

I'm using R version 3.1.3 for Windows in R Studio Version 0.98.1103.

回答1:

This question seems to hqve been answered quite recently, addressed in this issue of the devtools' github repository.

Package developer POV:

1) do:

devtools::use_package("jvamisc")
devtools::document()

to add the dependency in the Imports field of your DESCRIPTION file.

2) manually add a field "Remotes:" in the DESCRIPTION file, specifying where on github R should look for the package:

#in DESCRIPTION
Imports: ...,
   jvamisc,
   ...
Remotes: JVAdams/jvamisc

end-user POV:

1) the end user has to have the latest development version of devtools (or at least the one corresponding to commit #f21ca3516c). You have to somehow 'force him' to update his devtools version (I guess just put this in the installation instructions... Can't think of a better way)

devtools::install_github(“hadley/devtools”, ref = “f21ca3516c”)

2) Restart the R Session on unload/reload the devtools package

3) do the usual install_github

require(devtools)
devtools::install_github("user/LW1949")

I guess this functionality will be added sooner or later to the CRAN version of devtools, so there will be no need for the user to fetch the dev version and he would go directly to step 3).

The steps and additional options are detailed in this vignette

回答2:

The actual solution seems to add in your DESCRIPTION file the line

Remotes: hadley/testthat

see the documentation of devtools :

# Git
Remotes: git::https://github.com/hadley/ggplot2.git

# Bitbucket
Remotes: bitbucket::sulab/mygene.r@default, dannavarro/lsr-package

# Bioconductor
Remotes: bioc::3.3/SummarizedExperiment#117513, bioc::release/Biobase

# SVN
Remotes: svn::https://github.com/hadley/stringr

# URL
Remotes: url::https://github.com/hadley/stringr/archive/master.zip

# Local
Remotes: local::/pkgs/testthat

# Gitorious
Remotes: gitorious::r-mpc-package/r-mpc-package