I have a data frame called j:
dput(j)
structure(list(Trans = c(89.8, 3337, NA, 97.55, NA, 3558.7, NA,
4290.6, NA, 65.95, 94.55, 3495.9), `%CPU` = c(6.938, 79.853,
1.875, 4.87, 1.46, 37.885, 1.63, 64.576, 1.165, 3.425, 5.67,
33.856), `%Heap Used` = c(9.9, 76.95, 3.77, 9.8, 6.73, 59.23,
3.94, 67.38, 3.73, 9.13, 9.57, 62.11), `Heap Usage/MB` = c(263.884,
1942.246, 99.104, 257.717, 178.951, 1657.447, 99.933, 2137.134,
96.687, 242.024, 256.302, 1646.117)), .Names = c("Trans", "%CPU",
"%Heap Used", "Heap Usage/MB"), class = "data.frame", row.names = c(NA,
-12L))
If I want to color code a cell based on threshold in r markdown, how would I do that?
For example if %CPU>70, I need to color code that cell to be red.
I can print it in r markdown like this:
print(xtable(j_cor,digits=2,row.names=FALSE,caption="JVM Usage"),caption.placement="top", tabular.environment="longtable",comment=FALSE,floating=FALSE)
But I like to place colors in the cells based on threshold r markdown Any ideas?
I have tried something like this, but the color or the cell did not change in pdf file:
j[,2] = ifelse(j[,2] < 60, paste0("\\colorbox{red}{", j[,2], "}"), j[,2])
sessionInfo()
R version 3.2.4 (2016-03-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C LC_TIME=English_United States.1252
attached base packages:
[1] stats4 grid stats graphics grDevices utils datasets methods base
other attached packages:
[1] ggthemes_3.4.0 flexclust_1.3-4 modeltools_0.2-21 lattice_0.20-35 tidyr_0.6.1 jsonlite_1.4 Rcpp_0.12.10 lazyeval_0.2.0
[9] knitr_1.16 gridExtra_2.0.0 xtable_1.8-0 data.table_1.9.6 cowplot_0.6.2 reshape2_1.4.1 corrplot_0.77 scales_0.4.1
[17] stringr_1.0.0 chron_2.3-47 ggplot2_2.2.1 dplyr_0.5.0 purrr_0.2.2 xml2_1.0.0 plyr_1.8.4 RCurl_1.95-4.7
[25] bitops_1.0-6 XML_3.98-1.3 httr_1.0.0 rmarkdown_1.5
loaded via a namespace (and not attached):
[1] tools_3.2.4 digest_0.6.12 evaluate_0.10 tibble_1.3.0 gtable_0.2.0 DBI_0.6-1 parallel_3.2.4 yaml_2.1.14
[9] rprojroot_1.2 R6_2.2.1 magrittr_1.5 backports_1.1.0 htmltools_0.3.5 assertthat_0.2.0 colorspace_1.3-2 labeling_0.3
[17] stringi_1.1.5 munsell_0.4.3
I have copied the exact text to my Rstudio and tried to run it, I am getting this error:
"C:/Program Files/RStudio/bin/pandoc/pandoc" +RTS -K512m -RTS test_color.utf8.md --to latex --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash --output test_color.pdf --template "C:\R\win-library\3.2\rmarkdown\rmd\latex\default.tex" --highlight-style tango --latex-engine xelatex --variable graphics=yes --variable "geometry:margin=1in"
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.1 <
pandoc.exe: Error producing PDF from TeX source
Error: pandoc document conversion failed with error 43
In addition: Warning message:
running command '"C:/Program Files/RStudio/bin/pandoc/pandoc" +RTS -K512m -RTS test_color.utf8.md --to latex --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash --output test_color.pdf --template "C:\Documents\R\win-library\3.2\rmarkdown\rmd\latex\default.tex" --highlight-style tango --latex-engine xelatex --variable graphics=yes --variable "geometry:margin=1in"' had status 43