When you save a variable in an R data file using save
, it is saved under whatever name it had in the session that saved it. When I later go to load it from another session, it is loaded with the same name, which the loading script cannot possibly know. This name could overwrite an existing variable of the same name in the loading session. Is there a way to safely load an object from a data file into a specified variable name without risk of clobbering existing variables?
Example:
Saving session:
x = 5
save(x, file="x.Rda")
Loading session:
x = 7
load("x.Rda")
print(x) # This will print 5. Oops.
How I want it to work:
x = 7
y = load_object_from_file("x.Rda")
print(x) # should print 7
print(y) # should print 5
If you're just saving a single object, don't use an .Rdata
file, use an .RDS
file:
x <- 5
saveRDS(x, "x.rds")
y <- readRDS("x.rds")
all.equal(x, y)
You can create a new environment, load the .rda file into that environment, and retrieve the object from there. However, this does impose some restrictions: either you know what the original name for your object is, or there is only one object saved in the file.
This function returns an object loaded from a supplied .rda file. If there is more than one object in the file, an arbitrary one is returned.
load_obj <- function(f)
{
env <- new.env()
nm <- load(f, env)[1]
env[[nm]]
}
I use the following:
loadRData <- function(fileName){
#loads an RData file, and returns it
load(fileName)
get(ls()[ls() != "fileName"])
}
d <- loadRData("~/blah/ricardo.RData")
You could also try something like:
# Load the data, and store the name of the loaded object in x
x = load('data.Rsave')
# Get the object by its name
y = get(x)
# Remove the old object since you've stored it in y
rm(x)
In case anyone is looking to do this with a plain source file, rather than a saved Rdata/RDS/Rda file, the solution is very similar to the one provided by @Hong Ooi
load_obj <- function(fileName) {
local_env = new.env()
source(file = fileName, local = local_env)
return(local_env[[names(local_env)[1]]])
}
my_loaded_obj = load_obj(fileName = "TestSourceFile.R")
my_loaded_obj(7)
Prints:
[1] "Value of arg is 7"
And in the separate source file TestSourceFile.R
myTestFunction = function(arg) {
print(paste0("Value of arg is ", arg))
}
Again, this solution only works if there is exactly one file, if there are more, then it will just return one of them (probably the first, but that is not guaranteed).
Rdata file with one object
assign('newname', get(load('~/oldname.Rdata')))
I'm extending the answer from @ricardo to allow selection of specific variable if the .Rdata
file contains multiple variables (as my credits are low to edit an answer). It adds some lines to read user input after listing the variables contained in the .Rdata
file.
loadRData <- function(fileName) {
#loads an RData file, and returns it
load(fileName)
print(ls())
n <- readline(prompt="Which variable to load? \n")
get(ls()[as.integer(n)])
}
select_var <- loadRData('Multiple_variables.Rdata')