I'm trying to apply Gaussian Naive Bayes
model on a dataset to predict disease. It's running correctly when I'm predicting using training data, but when I'm trying to predict using testing data It's giving ValueError
.
runfile('D:/ROFI/ML/Heart Disease/prediction.py', wdir='D:/ROFI/ML/Heart Disease') Traceback (most recent call last):
File "", line 1, in runfile('D:/ROFI/ML/Heart Disease/prediction.py', wdir='D:/ROFI/ML/Heart Disease')
File "C:\Users\User\Anaconda3\lib\site-packages\spyder\utils\site\sitecustomize.py", line 866, in runfile execfile(filename, namespace)
File "C:\Users\User\Anaconda3\lib\site-packages\spyder\utils\site\sitecustomize.py", line 102, in execfile exec(compile(f.read(), filename, 'exec'), namespace)
File "D:/ROFI/ML/Heart Disease/prediction.py", line 85, in predict(x_train, y_train, x_test, y_test)
File "D:/ROFI/ML/Heart Disease/prediction.py", line 73, in predict predicted_data = model.predict(x_test)
File "C:\Users\User\Anaconda3\lib\site-packages\sklearn\naive_bayes.py", line 65, in predict jll = self._joint_log_likelihood(X)
File "C:\Users\User\Anaconda3\lib\site-packages\sklearn\naive_bayes.py", line 429, in _joint_log_likelihood n_ij -= 0.5 * np.sum(((X - self.theta_[i, :]) ** 2) /
ValueError: operands could not be broadcast together with shapes (294,14) (15,)
What's wrong here ?
import pandas
from sklearn import metrics
from sklearn.preprocessing import Imputer
from sklearn.naive_bayes import GaussianNB
def load_data(feature_columns, predicted_column):
train_data_frame = pandas.read_excel("training_data.xlsx")
test_data_frame = pandas.read_excel("testing_data.xlsx")
data_frame = pandas.read_excel("data_set.xlsx")
x_train = train_data_frame[feature_columns].values
y_train = train_data_frame[predicted_column].values
x_test = test_data_frame[feature_columns].values
y_test = test_data_frame[predicted_column].values
x_train, x_test = impute(x_train, x_test)
return x_train, y_train, x_test, y_test
def impute(x_train, x_test):
fill_missing = Imputer(missing_values=-9, strategy="mean", axis=0)
x_train = fill_missing.fit_transform(x_train)
x_test = fill_missing.fit_transform(x_test)
return x_train, x_test
def predict(x_train, y_train, x_test, y_test):
model = GaussianNB()
model.fit(x_train, y_train.ravel())
predicted_data = model.predict(x_test)
accuracy = metrics.accuracy_score(y_test, predicted_data)
print("Accuracy of our naive bayes model is : %.2f"%(accuracy * 100))
return predicted_data
feature_columns = ["age", "sex", "chol", "cigs", "years", "fbs", "trestbps", "restecg", "thalach", "exang", "oldpeak", "slope", "ca", "thal", "num"]
predicted_column = ["cp"]
x_train, y_train, x_test, y_test = load_data(feature_columns, predicted_column)
predict(x_train, y_train, x_test, y_test)
N.B: Both file has same number of columns.