Please check my reproducible example and the result chart.
X = t(USArrests)
plot_color_clust = function(X,N=N,
cols=c("red","blue", "orange", "darkgreen","green","yellow","grey","black","white")
){
library(ggplot2)
library(gridExtra)
library(gtable)
library(scales)
library(ggdendro)
library(grid)
library(plyr)
if(N>length(cols)) stop("N too big. Not enough colors in cols.")
if(N>ncol(X)) stop("N too big. Not enough columns in data.")
fit = ClustOfVar::hclustvar(X.quanti = X)
dd.row = as.dendrogram(fit)
ddata_x <- dendro_data(dd.row)
temp = cutree(fit,k=N)
lab <- ggdendro::label(ddata_x)
x=c()
for(i in 1:nrow(lab)){
x[i]= paste( "clust", as.vector(temp[ lab$label[i]==names(temp) ]) ,sep="")
}
lab$group <- x
p1 <- ggplot(segment(ddata_x)) +
geom_segment(aes(x=x, y=y, xend=xend, yend=yend))+coord_flip()+
geom_text(data=lab,
aes(label=label, x=x, y=0, colour=group),hjust=1) +
theme(legend.position="none",
axis.title.y=element_blank(),
axis.title.x=element_blank(),
axis.text.x = element_text(angle = 0, hjust = 0),
axis.title.x = element_text(angle = 0, hjust = 0))+
theme(axis.text = element_blank(), axis.title = element_blank(),
axis.ticks = element_blank(), axis.ticks.margin = unit(0, "lines"),
axis.ticks.length = unit(0, "cm"))+
scale_colour_manual(values=cols)+coord_flip()+
scale_y_continuous(limits = c(-0.1, 2.1))
df2<-data.frame(cluster=cutree(fit,N),states=factor(fit$labels,levels=fit$labels[fit$order]))
df3<-ddply(df2,.(cluster),summarise,pos=mean(as.numeric(states)))
p2 = ggplot(df2,aes(states,y=1,fill=factor(cluster)))+geom_tile()+
scale_y_continuous(expand=c(0,0))+
theme(axis.title=element_blank(),
axis.ticks=element_blank(),
axis.text=element_blank(),
legend.position="none")+coord_flip()+
geom_text(data=df3,aes(x=pos,label=cluster))+
scale_fill_manual(name = "This is my title", values = cols)
gp1<-ggplotGrob(p1)
gp2<-ggplotGrob(p2)
maxHeight = grid::unit.pmax(gp1$heights[2:5], gp2$heights[2:5])
gp1$heights[2:5] <- as.list(maxHeight)
gp2$heights[2:5] <- as.list(maxHeight)
#grid.arrange(gp2, gp1, ncol=2,widths=c(1/6,5/6))
R = arrangeGrob(gp2,gp1,ncol=2,widths=c(1/6,5/6))
R
}
plot_color_clust(X,6)
Questions:
These two parts (left colors tiles and right clustering tree) has inconsistent heights. How do we adjust their heights for them to match each other's?
How can we make the tree on the right side shorter so states names (clustered subjects) can have more space to be fully displayed?
Is there a way make the white space between those two parts smaller?
Your tweaking of the code is appreciated. Thanks.