I have some data in tsv format compressed using lzo. Now, I would like to use these data in a java spark program.
At the moment, I am able to decompress the files and then import them in Java as text files using
SparkSession spark = SparkSession.builder()
.master("local[2]")
.appName("MyName")
.getOrCreate();
Dataset<Row> input = spark.read()
.option("sep", "\t")
.csv(args[0]);
input.show(5); // visually check if data were imported correctly
where I have passed the path to the decompressed file in the first argument. If I pass the lzo file as an argument, the result of show is illegible garbage.
Is there a way to make it work? I use IntelliJ as an IDE and the project is set-up in Maven.
I found a solution. It consists of two parts: installing the hadoop-lzo package and configuring it; after doing this, the code will remain the same as in the question, provided one is OK with the lzo file being imported in a single partition.
In the following I will explain how to do it for a maven project set up in IntelliJ.
Installing the package hadoop-lzo: you need to modify the pom.xml
file that is in your maven project folder. It should contain the following excerpt:
<repositories>
<repository>
<id>twitter-twttr</id>
<url>http://maven.twttr.com</url>
</repository>
</repositories>
<properties>
<maven.compiler.source>1.8</maven.compiler.source>
<maven.compiler.target>1.8</maven.compiler.target>
</properties>
<dependencies>
<dependency>
<!-- Apache Spark main library -->
<groupId>org.apache.spark</groupId>
<artifactId>spark-core_2.11</artifactId>
<version>2.1.0</version>
</dependency>
<dependency>
<!-- Packages for datasets and dataframes -->
<groupId>org.apache.spark</groupId>
<artifactId>spark-sql_2.11</artifactId>
<version>2.1.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/com.hadoop.gplcompression/hadoop-lzo -->
<dependency>
<groupId>com.hadoop.gplcompression</groupId>
<artifactId>hadoop-lzo</artifactId>
<version>0.4.20</version>
</dependency>
</dependencies>
This will activate the maven Twitter repository that contains the package hadoop-lzo and make hadoop-lzo available for the project.
The second step is to create a core-site.xml
file to tell hadoop that you have installed a new codec. It should be placed somewhere in the program folders. I put it under src/main/resources/core-site.xml
and marked the folder as a resource (right click on the folder from the IntelliJ Project panel -> Mark Directory as -> Resources root). The core-site.xml
file should contain:
<configuration>
<property>
<name>io.compression.codecs</name>
<value>org.apache.hadoop.io.compress.DefaultCodec,
com.hadoop.compression.lzo.LzoCodec,
com.hadoop.compression.lzo.LzopCodec,
org.apache.hadoop.io.compress.GzipCodec,
org.apache.hadoop.io.compress.BZip2Codec</value>
</property>
<property>
<name>io.compression.codec.lzo.class</name>
<value>com.hadoop.compression.lzo.LzoCodec</value>
</property>
</configuration>
And that's it! Run your program again and it should work!