What is wrong with this INSERT INTO SELECT stateme

I am trying to run this code

INSERT INTO payroll_ho.tb_quotapos(QPCompany,QPQRndYear,QPQRndMonth,QPLine,QPPart,QPDep,QPBand,QPSubBand,QPPos,QPExist1,QPExist2,QPExist3)
SELECT "G02",2016,6,mp.PerWorkLine,mp.PerPart,mp.PerDep,PerBand,PerSubBand,mp.PerPos,c1,c2,c3 FROM ms_per mp
 LEFT JOIN payroll_ho.tb_subbandpos ON BPBand=mp.PerSubBand
 LEFT JOIN (SELECT PerWorkLine,PerPart,PerDep,PerPos,count(*) c1 FROM ms_per WHERE PerQuota=1 AND PerEmploying="Y" AND PerISO="Y"  AND PerCGroup = "01"  GROUP BY PerWorkLine,PerPart,PerDep,PerPos) mp1 ON mp.PerWorkLine=mp1.PerWorkLine AND mp.PerPart=mp1.PerPart AND mp.perdep=mp1.perdep AND mp.perpos=mp1.perpos
 LEFT JOIN (SELECT PerWorkLine,PerPart,PerDep,PerPos,count(*) c2 FROM ms_per WHERE PerQuota=2 AND PerEmploying="Y" AND PerISO="Y"  AND PerCGroup = "01"  GROUP BY PerWorkLine,PerPart,PerDep,PerPos) mp2 ON mp.PerWorkLine=mp2.PerWorkLine AND mp.PerPart=mp2.PerPart AND mp.perdep=mp2.perdep AND mp.perpos=mp2.perpos
 LEFT JOIN (SELECT PerWorkLine,PerPart,PerDep,PerPos,count(*) c3 FROM ms_per WHERE PerQuota=3 AND PerEmploying="Y" AND PerISO="Y"  AND PerCGroup = "01"  GROUP BY PerWorkLine,PerPart,PerDep,PerPos) mp3 ON mp.PerWorkLine=mp3.PerWorkLine AND mp.PerPart=mp3.PerPart AND mp.perdep=mp3.perdep AND mp.perpos=mp3.perpos
 WHERE mp.PerEmploying="Y"
  AND (c1>0 OR c2>0 OR c3>0)
 GROUP BY mp.PerWorkLine,mp.PerPart,mp.PerDep,PerBand,PerSubBand,mp.PerPos
ON DUPLICATE KEY UPDATE QPExist1=c1, QPExist2=c2, QPExist3=c3

MySQL returned an error Unknown column 'c1' in 'field list' Why MySQL doesn't see c1 in the SELECT clause?

EDIT: I think the problem is in the ON DUPLICATE clause. The SELECT works fine.

EDIT2: Here is the definitions for each table.

CREATE TABLE `tb_quotapos` (
  `QPCompany` varchar(3) NOT NULL,
  `QPQRndYear` int(4) NOT NULL,
  `QPQRndMonth` int(2) NOT NULL,
  `QPLine` varchar(2) NOT NULL,
  `QPPart` varchar(3) NOT NULL,
  `QPDep` varchar(4) NOT NULL,
  `QPBand` varchar(2) NOT NULL,
  `QPSubBand` varchar(3) NOT NULL,
  `QPPos` varchar(4) NOT NULL,
  `QPJobDesc` varchar(15) DEFAULT NULL,
  `QPQ1` int(3) DEFAULT NULL,
  `QPQ2` int(3) DEFAULT NULL,
  `QPQ3` int(3) DEFAULT NULL,
  `QPExist1` int(3) DEFAULT NULL,
  `QPExist2` int(3) DEFAULT NULL,
  `QPExist3` int(3) DEFAULT NULL,
  PRIMARY KEY (`QPCompany`,`QPQRndYear`,`QPQRndMonth`,`QPLine`,`QPPart`,`QPDep`,`QPBand`,`QPSubBand`,`QPPos`)
) ENGINE=MyISAM DEFAULT CHARSET=utf8

CREATE TABLE `ms_per` (
  `PerCompany` varchar(3) NOT NULL COMMENT 'รหัสบริษัท/สาขา',
  `PerCode` varchar(8) NOT NULL COMMENT 'รหัสพนักงาน',
  `PerIdenNo` varchar(13) DEFAULT NULL COMMENT 'เลขประจำตัว',
  `PerTitle` varchar(3) DEFAULT NULL COMMENT 'รหัสคำนำหน้า',
  `PerFName` varchar(30) DEFAULT NULL COMMENT 'ชื่อ',
  `PerLName` varchar(30) DEFAULT NULL COMMENT 'นามสกุล',
  `PerEName` varchar(64) DEFAULT NULL COMMENT 'ชื่อภาษาอังกฤษ',
  `PerCGroup` char(6) DEFAULT NULL COMMENT 'รหัสหน่วยงาน',
  `PerWorkLine` char(2) DEFAULT NULL COMMENT 'รหัสสายงาน',
  `PerPart` varchar(4) DEFAULT NULL COMMENT 'ฝ่าย',
  `PerDep` varchar(4) DEFAULT NULL COMMENT 'รหัสแผนก',
  `PerPos` varchar(4) DEFAULT NULL COMMENT 'รหัสตำแหน่ง',
  `PerGroup` varchar(1) DEFAULT NULL COMMENT 'รหัสกลุ่มพนักงาน',
  `PerEmploying` varchar(1) DEFAULT NULL COMMENT 'Y=อยู่ในบริษัท',
  `PerTravel` char(1) DEFAULT NULL COMMENT 'รหัสการเดินทาง',
  `PerTravCode` char(2) DEFAULT NULL COMMENT 'รหัสสายรถ',
  `PerRoomNo` varchar(3) DEFAULT NULL COMMENT 'เลขห้องพัก',
  `PerBand` char(2) DEFAULT '0' COMMENT 'รหัส Band พนักงาน',
  `PerSubBand` char(3) DEFAULT '0' COMMENT 'รหัส Band พนักงาน',
  `PerType` char(3) DEFAULT NULL COMMENT 'ประเภทพนักงาน',
  `PerShift` char(1) DEFAULT NULL COMMENT 'ช่วงเวลาทำงาน (กะ)',
  `PerShiftTime` char(3) DEFAULT '' COMMENT 'รหัส กะ(เวลา) เข้างาน (tb_workshift)',
  `PerDuty` varchar(4) DEFAULT NULL COMMENT 'รหัสหน้าที่',
  `PerDutyDesc` varchar(25) DEFAULT NULL,
  `PerD_M` char(1) DEFAULT 'D' COMMENT 'D:รายวัน  M:รายเดือน',
  `PerQPay` int(1) DEFAULT '2' COMMENT 'จำนวนงวดจ่าย (ต่อเดือน)',
  `PerTPay` char(1) DEFAULT '1' COMMENT 'จ่ายโดย  1:เข้าบัญชี    2:เงินสด',
  `PerQHrPerDay` float(2,0) DEFAULT '8' COMMENT 'จำนวนชั่วโมงทำงาน/วัน (นำมาคำนวณค่าแรง/ช.ม.)',
  `PerQDPerWeek` float(1,0) DEFAULT '6' COMMENT 'จำนวนวันทำงาน/สัปดาห์',
  `PerSoFlag` char(1) DEFAULT 'Y' COMMENT 'Y=เคยยื่นแบบ สปส',
  `PerSoStatus` char(1) DEFAULT 'Y' COMMENT 'Y:เข้าระบบประกันสังคม',
  `PerForeign` char(1) DEFAULT NULL COMMENT 'Y:ต่างด้าว',
  `BeginDate` varchar(6) DEFAULT NULL,
  `PerBeginDate` date DEFAULT NULL COMMENT 'วันเริ่มงาน',
  `BeginFull` varchar(8) DEFAULT NULL,
  `FillDate` varchar(6) DEFAULT NULL,
  `PerFillDate` date DEFAULT NULL COMMENT 'วันบรรจุงาน',
  `EndDate` varchar(6) DEFAULT NULL,
  `PerEndDate` date DEFAULT NULL COMMENT 'วันพ้นสภาพพนักงาน',
  `PerEndCode` char(2) DEFAULT '-' COMMENT 'รหัสการออก/พ้นสภาพพนักงาน',
  `PerEndLevel` char(2) DEFAULT '' COMMENT 'ระดับการพ้นสภาพ',
  `PerQuota` char(1) DEFAULT NULL COMMENT 'โควต้า(อัตรากำลังคน) 1:ชาย 2:หญิง  3:ชายหรือหญิง',
  `PerQuotaNo` varchar(10) DEFAULT NULL COMMENT 'เลขที่ใบขออัตรากำลัง',
  `PerPictFile` varchar(50) DEFAULT NULL COMMENT 'ชื่อไฟล์รูปภาพ',
  `PerLastComp` varchar(35) DEFAULT NULL COMMENT 'ที่ทำงานก่อนหน้านี้',
  `PerSkill` char(1) DEFAULT NULL COMMENT 'รหัสฝีมือ',
  `PerCutShirt` char(1) DEFAULT NULL COMMENT 'มีประกันเสื้อ',
  `PerISO` char(1) DEFAULT 'Y' COMMENT 'Y=เข้าระบบ ISO   N=ไม่เข้า',
  `PerISOType` char(1) DEFAULT '0' COMMENT 'ประเภท ISO',
  `PerTransfer` char(1) DEFAULT '-' COMMENT '9=โอนแล้ว',
  `sPerIdenEDate` varchar(8) DEFAULT NULL,
  `PerIdenEDate` date DEFAULT NULL COMMENT 'วันบัตรหมดอายุ',
  `per_user` varchar(10) DEFAULT NULL,
  `per_comid` varchar(15) DEFAULT NULL,
  `per_update` datetime DEFAULT NULL,
  PRIMARY KEY (`PerCompany`,`PerCode`),
  KEY `PerIdenNo` (`PerIdenNo`) USING BTREE,
  KEY `PerCode` (`PerCode`),
  KEY `PerEmploying` (`PerEmploying`),
  KEY `PerCGroup` (`PerCGroup`),
  KEY `SrchQuota` (`PerWorkLine`,`PerPart`,`PerDep`,`PerPos`,`PerBand`,`PerSubBand`) USING BTREE
) ENGINE=MyISAM DEFAULT CHARSET=utf8 COMMENT='แฟ้มข้อมูลพนักงาน'

CREATE TABLE `tb_subbandpos` (
  `BPCompany` varchar(3) NOT NULL COMMENT 'รหัสบริษัท',
  `BPBand` varchar(2) NOT NULL COMMENT 'รหัสแบนด์',
  `BPSubBand` varchar(3) NOT NULL COMMENT 'รหัสซับแบนด์',
  `BPPosCode` varchar(4) NOT NULL COMMENT 'รหัสตำแหน่ง',
  PRIMARY KEY (`BPCompany`,`BPBand`,`BPSubBand`,`BPPosCode`)
) ENGINE=MyISAM DEFAULT CHARSET=utf8

Try the following (note, I am still editing it to get the database name back in, I think 2 spots in front of table names).

But cleansing the column names through involving a derived table has done the trick. Derived tables have the wonderful side-effect of folding up values into the query that wraps it. In this case, it removes the group by forbidden-ness from on INSERT ON DUPLICATE UPDATE.

INSERT INTO tb_quotapos(QPCompany,QPQRndYear,QPQRndMonth,QPLine,QPPart,QPDep,QPBand,QPSubBand,QPPos,QPExist1,QPExist2,QPExist3)
select col1,col2,col3,col4,col5,col6,col7,col8,col9,col10,col11,col12
from
(   SELECT "G02" as col1,2016 as col2,6 as col3,
    mp.PerWorkLine as col4,mp.PerPart as col5,mp.PerDep as col6,
    PerBand as col7,PerSubBand as col8,mp.PerPos as col9,
    c1 as col10,c2 as col11,c3 as col12 
    FROM ms_per mp
    LEFT JOIN tb_subbandpos ON BPBand=mp.PerSubBand
    LEFT JOIN (SELECT PerWorkLine,PerPart,PerDep,PerPos,count(*) c1 FROM ms_per WHERE PerQuota=1 AND PerEmploying="Y" AND PerISO="Y"  AND PerCGroup = "01"  GROUP BY PerWorkLine,PerPart,PerDep,PerPos) mp1 ON mp.PerWorkLine=mp1.PerWorkLine AND mp.PerPart=mp1.PerPart AND mp.perdep=mp1.perdep AND mp.perpos=mp1.perpos
    LEFT JOIN (SELECT PerWorkLine,PerPart,PerDep,PerPos,count(*) c2 FROM ms_per WHERE PerQuota=2 AND PerEmploying="Y" AND PerISO="Y"  AND PerCGroup = "01"  GROUP BY PerWorkLine,PerPart,PerDep,PerPos) mp2 ON mp.PerWorkLine=mp2.PerWorkLine AND mp.PerPart=mp2.PerPart AND mp.perdep=mp2.perdep AND mp.perpos=mp2.perpos
    LEFT JOIN (SELECT PerWorkLine,PerPart,PerDep,PerPos,count(*) c3 FROM ms_per WHERE PerQuota=3 AND PerEmploying="Y" AND PerISO="Y"  AND PerCGroup = "01"  GROUP BY PerWorkLine,PerPart,PerDep,PerPos) mp3 ON mp.PerWorkLine=mp3.PerWorkLine AND mp.PerPart=mp3.PerPart AND mp.perdep=mp3.perdep AND mp.perpos=mp3.perpos
    WHERE mp.PerEmploying="Y"
    AND (c1>0 OR c2>0 OR c3>0)
    GROUP BY mp.PerWorkLine,mp.PerPart,mp.PerDep,PerBand,PerSubBand,mp.PerPos
) xDerived
ON DUPLICATE KEY UPDATE QPExist1=col10, QPExist2=col11, QPExist3=col12;

Version 2 (with the 2 places that seem to need payroll_ho.):

INSERT INTO payroll_ho.tb_quotapos(QPCompany,QPQRndYear,QPQRndMonth,QPLine,QPPart,QPDep,QPBand,QPSubBand,QPPos,QPExist1,QPExist2,QPExist3)
select col1,col2,col3,col4,col5,col6,col7,col8,col9,col10,col11,col12
from
(   SELECT "G02" as col1,2016 as col2,6 as col3,
    mp.PerWorkLine as col4,mp.PerPart as col5,mp.PerDep as col6,
    PerBand as col7,PerSubBand as col8,mp.PerPos as col9,
    c1 as col10,c2 as col11,c3 as col12 
    FROM ms_per mp
    LEFT JOIN payroll_ho.tb_subbandpos ON BPBand=mp.PerSubBand
    LEFT JOIN (SELECT PerWorkLine,PerPart,PerDep,PerPos,count(*) c1 FROM ms_per WHERE PerQuota=1 AND PerEmploying="Y" AND PerISO="Y"  AND PerCGroup = "01"  GROUP BY PerWorkLine,PerPart,PerDep,PerPos) mp1 ON mp.PerWorkLine=mp1.PerWorkLine AND mp.PerPart=mp1.PerPart AND mp.perdep=mp1.perdep AND mp.perpos=mp1.perpos
    LEFT JOIN (SELECT PerWorkLine,PerPart,PerDep,PerPos,count(*) c2 FROM ms_per WHERE PerQuota=2 AND PerEmploying="Y" AND PerISO="Y"  AND PerCGroup = "01"  GROUP BY PerWorkLine,PerPart,PerDep,PerPos) mp2 ON mp.PerWorkLine=mp2.PerWorkLine AND mp.PerPart=mp2.PerPart AND mp.perdep=mp2.perdep AND mp.perpos=mp2.perpos
    LEFT JOIN (SELECT PerWorkLine,PerPart,PerDep,PerPos,count(*) c3 FROM ms_per WHERE PerQuota=3 AND PerEmploying="Y" AND PerISO="Y"  AND PerCGroup = "01"  GROUP BY PerWorkLine,PerPart,PerDep,PerPos) mp3 ON mp.PerWorkLine=mp3.PerWorkLine AND mp.PerPart=mp3.PerPart AND mp.perdep=mp3.perdep AND mp.perpos=mp3.perpos
    WHERE mp.PerEmploying="Y"
    AND (c1>0 OR c2>0 OR c3>0)
    GROUP BY mp.PerWorkLine,mp.PerPart,mp.PerDep,PerBand,PerSubBand,mp.PerPos
) xDerived
ON DUPLICATE KEY UPDATE QPExist1=col10, QPExist2=col11, QPExist3=col12;

The derived table was necessary due to the Group By. From the Manual Page INSERT ... SELECT Syntax:

In the values part of ON DUPLICATE KEY UPDATE, you can refer to columns in other tables, as long as you do not use GROUP BY in the SELECT part. One side effect is that you must qualify nonunique column names in the values part.

Credit to Justin in his answer here. I did however give an updated link to the manual page above.