Im currently working on a program that converts text files and jpg-images into the HDF5-Format. Opened with the HDFView 3.0, it seems that the Images are only saved in greyscales.
hdf = h5py.File("Sample.h5")
img = Image.open("Image.jpg")
data = np.asarray((img), dtype="uint8")
hdf.create_dataset("Photos/Image 1", data=data, dtype='uint8')
dset = hdf.get("Photos/Image 1")
dset.attrs['CLASS'] = 'IMAGE'
dset.attrs['IMAGE_VERSION'] = '1.2'
arr = np.asarray([0, 255], dtype=np.uint8)
dset.attrs['IMAGE_MINMAXRANGE'] = list(arr)
dset.attrs['IMAGE_SUBCLASS'] = 'IMAGE_TRUECOLOR'
dset.attrs['INTERLACE_MODE'] = 'INTERLACE_PIXEL'
In python it is possible to show the original colored image with the Image.show() method:
hdf = h5py.File("Sample.h5")
array = np.array(list(hdf.get("Photos/Image 1")))
img = Image.fromarray(array.astype('uint8'))
img.show()
First part of the question.
Don't ask me why but maybe one of the maintainers of HDFview can step up.
To enable HDFview to correctly display images the attributes must be finite length string to be correctly interpreted.
Use np.string_(<string>)
from numpy package
import h5py
import numpy as np
from PIL import Image
hdf = h5py.File("Sample.h5",'w')
img = Image.open("Image.jpg")
data = np.asarray((img), dtype="uint8")
hdf.create_dataset("Photos/Image 1", data=data, dtype='uint8')
dset = hdf.get("Photos/Image 1")
dset.attrs['CLASS'] = np.string_('IMAGE')
dset.attrs['IMAGE_VERSION'] = np.string_('1.2')
arr = np.asarray([0, 255], dtype=np.uint8)
dset.attrs['IMAGE_MINMAXRANGE'] = list(arr)
dset.attrs['IMAGE_SUBCLASS'] = np.string_('IMAGE_TRUECOLOR')
dset.attrs['INTERLACE_MODE'] = np.string_('INTERLACE_PIXEL')
hdf.close()
This gives in HDFview by double clicking on dataset "Image 1"
Second question.
I suppose you are using the PIL package
The function fromarray
expects the "mode of the image" see https://pillow.readthedocs.io/en/3.1.x/handbook/concepts.html#concept-modes
In your case it's RBG
Therefore
import h5py
import numpy as np
from PIL import Image
hdf = h5py.File("Sample.h5",'r')
array = np.array(list(hdf.get("Photos/Image 1")))
img = Image.fromarray(array.astype('uint8'), 'RGB')
img.show()
will give you